BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644936|ref|NP_207106.1| hypothetical protein
[Helicobacter pylori 26695]
         (134 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2R2F|A  Chain A, Ribonucleotide Reductase R2f Protein Fr...    24  6.7
pdb|1QMO|A  Chain A, Structure Of Fril, A Legume Lectin That...    23  8.7

>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
          Length = 319

 Score = 23.9 bits (50), Expect = 6.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 48  YYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM 80
           Y G K ++ L+K ++IE+EE    + FAL L M
Sbjct: 198 YIGYKYQIALQKLSAIEREE---LKLFALDLLM 227



>pdb|1QMO|A Chain A, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|B Chain B, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|C Chain C, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|D Chain D, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
          Length = 113

 Score = 23.5 bits (49), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (58%)

Query: 20  IVYFFQAFQGVLNFEGGFLGFF 41
           + +F      V+++ GGFLG F
Sbjct: 88  LAFFIAPPDSVISYHGGFLGLF 109



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.150    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,448
Number of Sequences: 13198
Number of extensions: 26289
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 2,899,336
effective HSP length: 79
effective length of query: 55
effective length of database: 1,856,694
effective search space: 102118170
effective search space used: 102118170
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)