BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644937|ref|NP_207107.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(292 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical... 103 2e-23
pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nit... 72 6e-14
pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino... 63 3e-11
pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamo... 59 7e-10
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 26 6.2
>pdb|1F89|A Chain A, Crystal Structure Of Yeast Hypothetical Protein, Yl85
pdb|1F89|B Chain B, Crystal Structure Of Yeast Hypothetical Protein, Yl85
Length = 291
Score = 103 bits (258), Expect = 2e-23
Identities = 80/279 (28%), Positives = 133/279 (46%), Gaps = 29/279 (10%)
Query: 11 LKTAVIQMQSKPYALNENLQLALNLAKEA--HDKGANLIVLPELFDSGYFVNDKDADFGL 68
+K A++Q+ NLQ A + A L+VLPE F+S Y D
Sbjct: 11 IKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPY-----STDQFR 65
Query: 69 DFKAIEHSELKSETLRALSDFAKSNKVHLVACSIEKTN---QKLYDSAYIIPPKVGIVGK 125
+ + + + S +++ LS+ A K+ LV +I + + K+Y+++ I ++ K
Sbjct: 66 KYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDK 125
Query: 126 HRKIYLWG---------DEKSRFRRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLL 176
HRK++L+ E G+K +G F G+ ICY++ F A L
Sbjct: 126 HRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKF----GVGICYDMRFPELAMLS 181
Query: 177 ALQGAEVLIYPSAFGKARA-YNWDLLSRARALENGCFVCACNHNGEETNAQLKQTLEFAG 235
A +GA +IYPSAF +W LL+R+RA++N +V C+ L+ + G
Sbjct: 182 ARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCS-----PARNLQSSYHAYG 236
Query: 236 DSRIIAPNGKIIAQATKLNEVIIAEMDLNEVALQRQKIP 274
S ++ P GKI+A+A + E+I AE+D + RQ +P
Sbjct: 237 HSIVVDPRGKIVAEAGEGEEIIYAELDPEVIESFRQAVP 275
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 72.4 bits (176), Expect = 6e-14
Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 31/275 (11%)
Query: 14 AVIQMQSKPYALNENLQLALNLAKEAHDKGANLIVLPELFDS-GYFVNDK-DADFGLDFK 71
AV QM S L +N Q A N+ + A +K ++ LPE FD G N++ D D +
Sbjct: 18 AVCQMTSDN-DLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE 76
Query: 72 AIE-HSELKSE-----TLRAL-----SDFAKSNKVHLVACSIEKTNQKLYDSAYIIPPKV 120
+E + EL + +L L SD A HL+ S T + Y+ ++ +
Sbjct: 77 YMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAE-YNKLHLFD--L 133
Query: 121 GIVGKHRKIYLWGDEKSRFRRGKKYEVFTLDFGDFSAKVGLQICYEIGFGVGANLLALQG 180
I GK R + +S F + + +D ++GL ICY++ F + +G
Sbjct: 134 EIPGKVRLM------ESEFSKAGTEMIPPVDTP--IGRLGLSICYDVRFPELSLWNRKRG 185
Query: 181 AEVLIYPSAFG-KARAYNWDLLSRARALENGCFVCACNHNGEETNAQLKQTLEFAGDSRI 239
A++L +PSAF +W+ L RARA+EN C+V A G + + G S +
Sbjct: 186 AQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKR-----QSYGHSMV 240
Query: 240 IAPNGKIIAQATKLNEVIIAEMDLNEVALQRQKIP 274
+ P G ++AQ ++ ++ AE+DL+ V R+ P
Sbjct: 241 VDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQP 275
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 63.2 bits (152), Expect = 3e-11
Identities = 70/270 (25%), Positives = 121/270 (43%), Gaps = 41/270 (15%)
Query: 33 LNLAKEAHDKGANLIVLPEL-----FDSGYFVNDKDADFGLDFKAIEHSELKSETLRALS 87
L++ +A +GAN IV PEL F +F ++ + D + +E+ +R L
Sbjct: 28 LDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELD------SFYETEMPGPVVRPLF 81
Query: 88 DFAKSNKVHL----VACSIEKTNQKLYDSAYIIPPKVGIVGKHRKIYLWGD-EKSRFRRG 142
+ A + +E ++ ++++ ++ IVGK+RKI+L G E +R
Sbjct: 82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 141
Query: 143 KKYEVFTLDFGDF--------SAKVGLQICYEIGFGVGANLLALQGAEVLI--YPSAFGK 192
+ E + GD +AK+G+ IC + + ++ L+GAE++ Y +
Sbjct: 142 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNTPTHN 201
Query: 193 ARAYNWDLLS--------RARALENGCFVCACNHNGEETNAQLKQTLEFAGDSRIIAPNG 244
D L+ +A + +NG + A G E N L G S I+AP G
Sbjct: 202 PPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEENCML------LGHSCIVAPTG 255
Query: 245 KIIAQATKL-NEVIIAEMDLNEVALQRQKI 273
+I+A T L +EVI A +DL+ R+ I
Sbjct: 256 EIVALTTTLEDEVITAAVDLDRCRELREHI 285
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 58.9 bits (141), Expect = 7e-10
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 41/270 (15%)
Query: 33 LNLAKEAHDKGANLIVLPEL-----FDSGYFVNDKDADFGLDFKAIEHSELKSETLRALS 87
L++ A +G N IV PEL F +F ++ + D + +E+ +R L
Sbjct: 29 LDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD------SFYETEMPGPVVRPLF 82
Query: 88 DFAKSNKVHL----VACSIEKTNQKLYDSAYIIPPKVGIVGKHRKIYLWGD-EKSRFRRG 142
+ A + +E ++ ++++ ++ IVGK+RKI+L G E +R
Sbjct: 83 ETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 142
Query: 143 KKYEVFTLDFGDF--------SAKVGLQICYEIGFGVGANLLALQGAEVLI--YPSAFGK 192
+ E + GD +AK+G+ IC + + ++ L+GAE++ Y +
Sbjct: 143 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHN 202
Query: 193 ARAYNWDLLS--------RARALENGCFVCACNHNGEETNAQLKQTLEFAGDSRIIAPNG 244
D L+ +A + +NG + A G E L G S I+AP G
Sbjct: 203 PPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEEGCML------LGHSCIVAPTG 256
Query: 245 KIIAQATKL-NEVIIAEMDLNEVALQRQKI 273
+I+A T L +EVI A +DL+ R+ I
Sbjct: 257 EIVALTTTLEDEVITAALDLDRCRELREHI 286
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 25.8 bits (55), Expect = 6.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 126 HRKIYLWGDEKSRFRRGKKYEV 147
H K Y GD +RFRR + YEV
Sbjct: 52 HLKNYTMGDVLARFRRMQGYEV 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,617,770
Number of Sequences: 13198
Number of extensions: 65550
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 6
length of query: 292
length of database: 2,899,336
effective HSP length: 87
effective length of query: 205
effective length of database: 1,751,110
effective search space: 358977550
effective search space used: 358977550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)