BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644938|ref|NP_207108.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (293 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1A8Q|    Bromoperoxidase A1                                    27  2.8
pdb|1GPW|C  Chain C, Structural Evidence For Ammonia Tunneli...    27  2.8
pdb|1DLC|    Delta-Endotoxin Cryiiia (Bt13)                        26  4.7

>pdb|1A8Q|   Bromoperoxidase A1
          Length = 274

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 11/31 (35%), Positives = 19/31 (60%), Gaps = 3/31 (9%)

Query: 67 ETFSEQMKMIVDAGHEVGAH---GYSHENPI 94
          + + +Q+K +VDAG+   AH   G+ H  P+
Sbjct: 33 DAWQDQLKAVVDAGYRGIAHDRRGHGHSTPV 63



>pdb|1GPW|C Chain C, Structural Evidence For Ammonia Tunneling Across The
           (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
           Synthase Bienzyme Complex.
 pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The
           (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
           Synthase Bienzyme Complex.
 pdb|1GPW|E Chain E, Structural Evidence For Ammonia Tunneling Across The
           (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
           Synthase Bienzyme Complex
          Length = 253

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 26/116 (22%), Positives = 43/116 (36%), Gaps = 22/116 (18%)

Query: 1   MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLL------------- 47
           +AK I+    V    V          DS D +  G F  E+GI  L+             
Sbjct: 2   LAKRIIACLNVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKT 61

Query: 48  ------KLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMT 97
                 K+ ++  +P   F+ G  I  F    ++I+    +V  +  + ENP  +T
Sbjct: 62  MLELVEKVAEQIDIP---FTVGGGIHDFETASELILRGADKVSINTAAVENPSLIT 114



>pdb|1DLC|   Delta-Endotoxin Cryiiia (Bt13)
          Length = 584

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 20/67 (29%), Positives = 27/67 (39%), Gaps = 9/67 (13%)

Query: 93  PIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSL-MH 151
           P  +  +   DVL   +  + +L G   T        FSNI N +   H F Y H +  H
Sbjct: 232 PKEVKTELTRDVLTDPIVGVNNLRGYGTT--------FSNIENYIRKPHLFDYLHRIQFH 283

Query: 152 NDFTPYY 158
             F P Y
Sbjct: 284 TRFQPGY 290



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,986,044
Number of Sequences: 13198
Number of extensions: 88448
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 3
length of query: 293
length of database: 2,899,336
effective HSP length: 87
effective length of query: 206
effective length of database: 1,751,110
effective search space: 360728660
effective search space used: 360728660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)