BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644939|ref|NP_207109.1| hypothetical protein
[Helicobacter pylori 26695]
         (122 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BT3|A  Chain A, Catechol Oxidase From Ipomoea Batatas (...    26  1.1
pdb|1FWX|A  Chain A, Crystal Structure Of Nitrous Oxide Redu...    26  1.5
pdb|1E5D|A  Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) ...    23  9.4
pdb|1FUI|A  Chain A, L-Fucose Isomerase From Escherichia Col...    23  9.4

>pdb|1BT3|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
           The Native Cu(Ii)-Cu(Ii) State
 pdb|1BUG|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
           Inhibitor Complex With Phenylthiourea (Ptu)
 pdb|1BUG|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
           Inhibitor Complex With Phenylthiourea (Ptu)
 pdb|1BT1|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
           The Native Cu(Ii)-Cu(Ii) State
 pdb|1BT1|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
           The Native Cu(Ii)-Cu(Ii) State
 pdb|1BT2|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
           The Reduced Cu(I)-Cu(I) State
 pdb|1BT2|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
           The Reduced Cu(I)-Cu(I) State
          Length = 345

 Score = 26.2 bits (56), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 4/46 (8%)

Query: 66  NDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQ---NLAKKEMDALDS 108
           +DW  A F+  D+ GQ+V V  +GD  D  +     AK  +  LDS
Sbjct: 299 SDWLNATFLFYDENGQAVKVR-IGDSLDNQKMGYKYAKTPLPWLDS 343



>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
           Denitrificans
 pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
           Denitrificans
 pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
           Denitrificans
 pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
           Denitrificans
          Length = 595

 Score = 25.8 bits (55), Expect = 1.5
 Identities = 10/35 (28%), Positives = 21/35 (59%)

Query: 61  YGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKA 95
           +GL+   W  + +V C+ + ++ +VND  ++ D A
Sbjct: 137 HGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 171



>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
           Desulfovibrio Gigas
 pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
           Desulfovibrio Gigas
          Length = 402

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 13  HWTDESDSYGIDENLKGQNALISANENARERKRARLKRVRLLNQILAFYGLKINDW 68
           HW D   S+  DE +   N +   N  A ER   ++    L   +  +Y   +N +
Sbjct: 146 HWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPY 201



>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
          Length = 591

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (58%)

Query: 7   ELISSFHWTDESDSYGIDENLK 28
           EL  +  W D++  YG DEN K
Sbjct: 226 ELEMALAWADKNFRYGEDENNK 247



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,811
Number of Sequences: 13198
Number of extensions: 22798
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 2,899,336
effective HSP length: 77
effective length of query: 45
effective length of database: 1,883,090
effective search space: 84739050
effective search space used: 84739050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)