BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644940|ref|NP_207110.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(321 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1XPA| Solution Structure Of The Dna- And Rpa-Binding ... 29 0.82
pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excisi... 28 1.8
pdb|1A8D| Tetanus Toxin C Fragment >gi|3212428|pdb|1AF9| ... 26 5.3
pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Compl... 26 5.3
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 5.3
pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 5.3
pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 26 5.3
pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Recep... 25 9.1
pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2) 25 9.1
>pdb|1XPA| Solution Structure Of The Dna- And Rpa-Binding Domain Of The Human
Repair Factor Xpa, Nmr, 1 Structure
Length = 122
Score = 28.9 bits (63), Expect = 0.82
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 116 DTFLGVHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVL---------LTKTDLQND 166
D++L HF++ + C DA + + +T EAK++ + D L + K + +
Sbjct: 17 DSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHS 76
Query: 167 SAALTKLKERIQALNPSAEIF-DKRAIDYESLFSRKNRAR 205
KL ++Q + S E++ + A++ ++NR +
Sbjct: 77 QWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREK 116
>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein
Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n
Nmr Relaxation Studies
Length = 111
Score = 27.7 bits (60), Expect = 1.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 116 DTFLGVHFEIQSVVACVDALNAREHLTNNEAKEQIVFAD 154
D++L HF++ + C DA + + +T EAK++ + D
Sbjct: 17 DSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKD 55
>pdb|1A8D| Tetanus Toxin C Fragment
pdb|1AF9| Tetanus Neurotoxin C Fragment
Length = 452
Score = 26.2 bits (56), Expect = 5.3
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 143 NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFDKRAIDYESLFSRKN 202
NN+ I +S ++T D Q K + N S+E+ +A+D E N
Sbjct: 29 NNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVN--NESSEVIVHKAMDIEYNDMFNN 86
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI-----KGI 257
+F R+PK S S L QYGT I K
Sbjct: 87 FTVSFWLRVPKVSASH-------------------------LEQYGTNEYSIISSMKKHS 121
Query: 258 IDIGSGFLVSING 270
+ IGSG+ VS+ G
Sbjct: 122 LSIGSGWSVSLKG 134
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
Length = 441
Score = 26.2 bits (56), Expect = 5.3
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 143 NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFDKRAIDYESLFSRKN 202
NN+ I +S ++T D Q K + N S+E+ +A+D E N
Sbjct: 18 NNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVN--NESSEVIVHKAMDIEYNDMFNN 75
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI-----KGI 257
+F R+PK S S L QYGT I K
Sbjct: 76 FTVSFWLRVPKVSASH-------------------------LEQYGTNEYSIISSMKKHS 110
Query: 258 IDIGSGFLVSING 270
+ IGSG+ VS+ G
Sbjct: 111 LSIGSGWSVSLKG 123
>pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 26.2 bits (56), Expect = 5.3
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 143 NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFDKRAIDYESLFSRKN 202
NN+ I +S ++T D Q K + N S+E+ +A+D E N
Sbjct: 49 NNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVN--NESSEVIVHKAMDIEYNDMFNN 106
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI-----KGI 257
+F R+PK S S L QYGT I K
Sbjct: 107 FTVSFWLRVPKVSASH-------------------------LEQYGTNEYSIISSMKKHS 141
Query: 258 IDIGSGFLVSING 270
+ IGSG+ VS+ G
Sbjct: 142 LSIGSGWSVSLKG 154
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 26.2 bits (56), Expect = 5.3
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 143 NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFDKRAIDYESLFSRKN 202
NN+ I +S ++T D Q K + N S+E+ +A+D E N
Sbjct: 46 NNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVN--NESSEVIVHKAMDIEYNDMFNN 103
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI-----KGI 257
+F R+PK S S L QYGT I K
Sbjct: 104 FTVSFWLRVPKVSASH-------------------------LEQYGTNEYSIISSMKKHS 138
Query: 258 IDIGSGFLVSING 270
+ IGSG+ VS+ G
Sbjct: 139 LSIGSGWSVSLKG 151
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 26.2 bits (56), Expect = 5.3
Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 143 NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFDKRAIDYESLFSRKN 202
NN+ I +S ++T D Q K + N S+E+ +A+D E N
Sbjct: 21 NNDIISDISGFNSSVITYPDAQLVPGINGKAIHLVN--NESSEVIVHKAMDIEYNDMFNN 78
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI-----KGI 257
+F R+PK S S L QYGT I K
Sbjct: 79 FTVSFWLRVPKVSASH-------------------------LEQYGTNEYSIISSMKKHS 113
Query: 258 IDIGSGFLVSING 270
+ IGSG+ VS+ G
Sbjct: 114 LSIGSGWSVSLKG 126
>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|1ES7|C Chain C, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
Length = 116
Score = 25.4 bits (54), Expect = 9.1
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 13/67 (19%)
Query: 21 LSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLK 80
L+++LN T+H V ++N + + + MLYL+ E+ K
Sbjct: 53 LADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLD-------------ENEK 99
Query: 81 ATLNNYE 87
L NY+
Sbjct: 100 VVLKNYQ 106
>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2)
Length = 114
Score = 25.4 bits (54), Expect = 9.1
Identities = 16/67 (23%), Positives = 28/67 (40%), Gaps = 13/67 (19%)
Query: 21 LSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLK 80
L+++LN T+H V ++N + + + MLYL+ E+ K
Sbjct: 51 LADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLD-------------ENEK 97
Query: 81 ATLNNYE 87
L NY+
Sbjct: 98 VVLKNYQ 104
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,800,116
Number of Sequences: 13198
Number of extensions: 70558
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 14
length of query: 321
length of database: 2,899,336
effective HSP length: 88
effective length of query: 233
effective length of database: 1,737,912
effective search space: 404933496
effective search space used: 404933496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)