BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644664|ref|NP_206833.1| hypothetical protein
[Helicobacter pylori 26695]
(137 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Uni... 28 0.37
pdb|1HLB| Hemoglobin (Sea Cucumber) 28 0.37
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Comp... 25 4.1
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 24 5.4
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 24 5.4
pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenas... 24 7.0
pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive... 24 7.0
pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Se... 24 7.0
pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wol... 23 9.2
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wol... 23 9.2
pdb|2SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant W... 23 9.2
>pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|B Chain B, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|C Chain C, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|D Chain D, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
Length = 141
Score = 28.1 bits (61), Expect = 0.37
Identities = 30/137 (21%), Positives = 61/137 (43%), Gaps = 8/137 (5%)
Query: 2 NILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQT---EAL 58
+IL + ++E +K AV +A + + +++HV + F +G++D + + +
Sbjct: 4 HILVAVDLSEESPILLKKAVGIAKR-HDAKLSIIHVDVN-FSDLYTGLIDVNMSSMQDRI 61
Query: 59 EEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLF 118
E KALL E + E + SGDL V+ D + YD+ L+ +
Sbjct: 62 STETQKALLDLAESV---DYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKL 118
Query: 119 ISHQNSLVEQSSIPVVI 135
+S ++ I +++
Sbjct: 119 MSSTRQVMNTIKIDMLV 135
>pdb|1HLB| Hemoglobin (Sea Cucumber)
Length = 158
Score = 28.1 bits (61), Expect = 0.37
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 37 VSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIECESV--LKSGDLIDVV 94
V + +F Y S + Q + + ++ + A + +I E V L S L +++
Sbjct: 39 VFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDSDILPELL 98
Query: 95 LDMAKDYDLLLIGASESNLLYRLFI 119
+A+ +DL +GA NL ++ +
Sbjct: 99 ATLARTHDLNKVGADHYNLFAKVLM 123
>pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
Length = 267
Score = 24.6 bits (52), Expect = 4.1
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 7/91 (7%)
Query: 22 KLAHSLKEVRFTL---LHVSMEVFIYSESGM-MDYGQTEALEEEKAKALLKQFEDAFKKE 77
+L+ KEV F + I+S G ++YG +AL + K + LK D E
Sbjct: 28 RLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYG-VKALRKVKEEFGLKITTDIH--E 84
Query: 78 NIECESVLKSGDLIDVVLDMAKDYDLLLIGA 108
+ + E V + D+I + + + DLLL A
Sbjct: 85 SWQAEPVAEVADIIQIPAFLCRQTDLLLAAA 115
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 24.3 bits (51), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 35 LHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENI 79
L ME+ I +G YG+ AL EE +K +A K + +
Sbjct: 177 LSEKMEIIIVDTAGRHGYGEEAALLEE-----MKNIYEAIKPDEV 216
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 24.3 bits (51), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 35 LHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENI 79
L ME+ I +G YG+ AL EE +K +A K + +
Sbjct: 177 LSEKMEIIIVDTAGRHGYGEEAALLEE-----MKNIYEAIKPDEV 216
>pdb|1B7G|O Chain O, Glyceraldehyde 3-Phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-Phosphate Dehydrogenase
Length = 340
Score = 23.9 bits (50), Expect = 7.0
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 11/46 (23%)
Query: 99 KDYDLLLIGASESNLLYRLFISHQNSL-----------VEQSSIPV 133
K D+ L+G ++++ Y FI+H+ + E+S IPV
Sbjct: 22 KQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV 67
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 23.9 bits (50), Expect = 7.0
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 11/61 (18%)
Query: 59 EEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLF 118
E K +A+ K F+DA+K + + C VV D+ + D + IG SNL+ +
Sbjct: 106 ETAKCQAMKKIFDDAYKSQ-LSCV----------VVDDIERLLDYVPIGPRFSNLVLQAL 154
Query: 119 I 119
+
Sbjct: 155 L 155
>pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 273
Score = 23.9 bits (50), Expect = 7.0
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 11/61 (18%)
Query: 59 EEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLF 118
E K +A+ K F+DA+K + + C VV D+ + D + IG SNL+ +
Sbjct: 105 ETAKCQAMKKIFDDAYKSQ-LSCV----------VVDDIERLLDYVPIGPRFSNLVLQAL 153
Query: 119 I 119
+
Sbjct: 154 L 154
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Azide Complex
Length = 507
Score = 23.5 bits (49), Expect = 9.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 41 VFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIECESVLK 86
V + ++ G +DY + +EKA+ L K +AF E ++ + L+
Sbjct: 429 VKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLE 474
>pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes- Sulfate Complex
pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
Length = 485
Score = 23.5 bits (49), Expect = 9.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 41 VFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIECESVLK 86
V + ++ G +DY + +EKA+ L K +AF E ++ + L+
Sbjct: 407 VKVLAKYGAIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLE 452
>pdb|2SNM| Staphylococcal Nuclease (E.C.3.1.31.1) Mutant With Val 66
Replaced By Lys (V66k)
Length = 149
Score = 23.5 bits (49), Expect = 9.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 21 VKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK 76
VKL + + + F LL V + + G+ YG + +K K K+ E F K
Sbjct: 23 VKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMKENAKKIEVEFDK 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,901
Number of Sequences: 13198
Number of extensions: 22408
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 2,899,336
effective HSP length: 79
effective length of query: 58
effective length of database: 1,856,694
effective search space: 107688252
effective search space used: 107688252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)