BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644943|ref|NP_207113.1| virulence associated
protein D (vapD) [Helicobacter pylori 26695]
(94 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By ... 25 1.8
pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5 24 2.4
pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Pro... 23 5.3
pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-G... 23 6.9
pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From St... 23 6.9
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed ... 23 6.9
pdb|1BBH|A Chain A, Cytochrome C' >gi|493868|pdb|1BBH|B Cha... 23 6.9
pdb|1ECR|A Chain A, Escherichia Coli Replication Terminator... 23 6.9
pdb|1BUA|B Chain B, EcorvGACITCCA2+ 22 9.0
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 22 9.0
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 22 9.0
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 22 9.0
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 22 9.0
pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing... 22 9.0
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 22 9.0
>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
Cell Cycle Transcription Factor E2f-Dp
Length = 95
Score = 24.6 bits (52), Expect = 1.8
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 6 FDLKI-EILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKL 64
F +K+ E ++++ YN+ D+L E S Y ++N +VY A+N L
Sbjct: 15 FSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAY---DQKNIRRRVYDALNVL 71
Query: 65 SQIEWFKKSVRDIR 78
+ K ++I+
Sbjct: 72 MAMNIISKEKKEIK 85
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
Length = 473
Score = 24.3 bits (51), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 19 EPYNKAYDDLRQELELLGFEWTQGSVYVNY 48
E + K + L + +ELLG W Q VY N+
Sbjct: 174 EEFLKLMESLHENVELLGTPWLQ--VYNNF 201
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 23.1 bits (48), Expect = 5.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 22 NKAYDDLRQELELLGFEWTQGSVYVNYSK--ENTLAQ------VYKAINKLSQIEWFKKS 73
+K +D+ EL+ LGF W SV+ + K ++ L Q +A +L IE+ K S
Sbjct: 10 DKNFDEQLAELDQLGFRW---SVFWDEKKILKDFLIQSPSDMTALQATAELDVIEFLKSS 66
Query: 74 V 74
+
Sbjct: 67 I 67
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
Length = 582
Score = 22.7 bits (47), Expect = 6.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 12 ILKKEYGEPYNKAYDDLRQELELLG 36
I + ++GE ++A+DD + EL G
Sbjct: 443 IAEYQFGEGASRAFDDAKVELSKTG 467
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 22.7 bits (47), Expect = 6.9
Identities = 14/30 (46%), Positives = 18/30 (59%), Gaps = 6/30 (20%)
Query: 6 FDLKIEILKKEYGEPYNKAYDDLRQELELL 35
FDL + LKK+Y P YDD+ +L LL
Sbjct: 77 FDLSL--LKKKYLRP----YDDISHDLMLL 100
>pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
Length = 516
Score = 22.7 bits (47), Expect = 6.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 8 LKIEILKKEYGEPYN------KAYDDLRQELELLG 36
L ++++KEYGE Y K Y D+ ++ L G
Sbjct: 133 LASDVIRKEYGELYTAFAAAMKPYKDVIAKIYLSG 167
>pdb|1BBH|A Chain A, Cytochrome C'
pdb|1BBH|B Chain B, Cytochrome C'
Length = 131
Score = 22.7 bits (47), Expect = 6.9
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 31 ELELLGFE---WTQGSVYVNYSKENTLAQVYKAINKLSQI 67
E G+E W G + N E AQV A N ++ I
Sbjct: 10 ETRQAGYEFMGWNMGKIKANLEGEYNAAQVEAAANVIAAI 49
>pdb|1ECR|A Chain A, Escherichia Coli Replication Terminator Protein (Tus)
Complexed With Dna
Length = 309
Score = 22.7 bits (47), Expect = 6.9
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 35 LGFEWTQGSVYVNYSKENTLAQVYKAINKLSQI------EWFKKSVRD 76
L F W + N ++ LAQ+ K++ + EW +K R+
Sbjct: 168 LRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLERE 215
>pdb|1BUA|B Chain B, EcorvGACITCCA2+
Length = 229
Score = 22.3 bits (46), Expect = 9.0
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 34 LLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEW 69
++G+ +T+ N ++ N + + YK + Q +W
Sbjct: 124 IIGYVYTRSLKTYNINELNEIPKPYKGVKVFLQDKW 159
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 26 DDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+ ++ ++E LGF W+ Y + + A + INK
Sbjct: 79 ESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINK 116
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 26 DDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+ ++ ++E LGF W+ Y + + A + INK
Sbjct: 79 ESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINK 116
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 26 DDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+ ++ ++E LGF W+ Y + + A + INK
Sbjct: 79 ESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINK 116
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 26 DDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+ ++ ++E LGF W+ Y + + A + INK
Sbjct: 80 ESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINK 117
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 22.3 bits (46), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 6 FDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQ 41
F L+ LKKE + + YD +R+ L +L +T+
Sbjct: 31 FKLRETYLKKEPXDRRAQTYDAIRKXLAVLDDPFTR 66
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/38 (26%), Positives = 19/38 (49%)
Query: 26 DDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+ ++ ++E LGF W+ Y + + A + INK
Sbjct: 79 ESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINK 116
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,884
Number of Sequences: 13198
Number of extensions: 19347
Number of successful extensions: 89
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 15
length of query: 94
length of database: 2,899,336
effective HSP length: 70
effective length of query: 24
effective length of database: 1,975,476
effective search space: 47411424
effective search space used: 47411424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)