BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644944|ref|NP_207114.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PMI| Human Rantes 29 0.20
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epo... 28 0.34
pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Bind... 27 0.75
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 27 0.98
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 27 0.98
pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZI... 27 0.98
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 26 1.7
pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution S... 26 1.7
pdb|1K8G|C Chain C, Crystal Structure Of The N-Terminal Dom... 26 1.7
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 25 2.2
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 25 2.2
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 25 2.2
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 25 2.2
pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Co... 25 2.9
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 25 3.7
pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Db... 25 3.7
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 25 3.7
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolob... 25 3.7
pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Ph... 24 4.9
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 24 4.9
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 24 6.3
pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metal... 24 6.3
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fib... 24 6.3
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate... 23 8.3
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 23 8.3
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase... 23 8.3
pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal B... 23 8.3
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma ... 23 8.3
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 23 8.3
>pdb|1PMI| Human Rantes
Length = 440
Score = 28.9 bits (63), Expect = 0.20
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 30 KKMQNDRISFKEKMAKELEKRD---QNFKDKIDALNELLQKISQAF 72
K M D K++ AK LE+ D Q FKD L EL+Q++++ F
Sbjct: 207 KLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLPELIQRLNKQF 252
>pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 28.1 bits (61), Expect = 0.34
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Query: 56 DKIDALNELLQKISQAFDDKRDCC-LGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNE 114
DK D+L +++ ++SQ FD + C +G P + + D L ++ LDDF +
Sbjct: 131 DKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKA-KPNEVVFLDDFGSN 189
Query: 115 LKRENSKGFENV 126
LK G +
Sbjct: 190 LKPARDMGMVTI 201
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 0.75
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 8 KDYTK-YSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKR---DQNFKDKIDALNE 63
+D+T+ + + L + I ++ + + K+Q + KEK+A++ ++R D D+ D + E
Sbjct: 611 RDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLE 670
Query: 64 -----LLQKISQAFDDKRDCCL 80
L +K+ A ++++ L
Sbjct: 671 EQIERLQEKVESAQSEQKNLFL 692
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.6 bits (57), Expect = 0.98
Identities = 15/47 (31%), Positives = 22/47 (45%)
Query: 47 LEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAM 93
L+ D+ K+K D L L + I+ DD + NI TQ+ M
Sbjct: 116 LDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMM 162
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 26.6 bits (57), Expect = 0.98
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ I+ K A+ + +R ++ KD++ DAL E++
Sbjct: 658 LKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVI 695
>pdb|1CI6|A Chain A, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 26.6 bits (57), Expect = 0.98
Identities = 14/61 (22%), Positives = 34/61 (54%), Gaps = 13/61 (21%)
Query: 27 RKIKKMQNDRIS---FKEKM----------AKELEKRDQNFKDKIDALNELLQKISQAFD 73
+K+KKM+ ++ + +++K KELEK+++ K++ D+L + +Q + +
Sbjct: 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61
Query: 74 D 74
+
Sbjct: 62 E 62
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 25.8 bits (55), Expect = 1.7
Identities = 19/86 (22%), Positives = 43/86 (49%), Gaps = 12/86 (13%)
Query: 21 LIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNE-------LLQKISQAFD 73
++H+++RK ++M + ++ K+L ++ +N D++ L E LQ+ Q
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN--DRVQLLKEQERTLALKLQEQEQLLK 562
Query: 74 D---KRDCCLGHEIPNIETQQAMRDA 96
+ K + +EI +++T+ R A
Sbjct: 563 EGFQKESRIMKNEIQDLQTKMRRRKA 588
>pdb|1JB7|A Chain A, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
pdb|1OTC|A Chain A, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1KIX|A Chain A, Dimeric Structure Of The O. Nova Telomere End Binding
Protein Alpha Subunit With Bound Ssdna
Length = 495
Score = 25.8 bits (55), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (75%)
Query: 102 LTQIDSLDDFTNELKRENSKG 122
+ Q+ LD++TNELK +++ G
Sbjct: 230 ILQVHELDEYTNELKLKDASG 250
>pdb|1K8G|C Chain C, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|B Chain B, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
pdb|1K8G|A Chain A, Crystal Structure Of The N-Terminal Domain Of Oxytricha
Nova Telomere End Binding Protein Alpha Subunit Both
Uncomplexed And Complexed With Telomeric Ssdna
Length = 320
Score = 25.8 bits (55), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (75%)
Query: 102 LTQIDSLDDFTNELKRENSKG 122
+ Q+ LD++TNELK +++ G
Sbjct: 230 ILQVHELDEYTNELKLKDASG 250
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 25.4 bits (54), Expect = 2.2
Identities = 13/58 (22%), Positives = 36/58 (61%), Gaps = 5/58 (8%)
Query: 8 KDYTK-YSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKE----LEKRDQNFKDKIDA 60
+D+T+ + + L + I ++ + + K+Q + KEK+A++ LE++ + ++K+++
Sbjct: 611 RDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHDGVLEEQIERLQEKVES 668
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 25.4 bits (54), Expect = 2.2
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 658 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 695
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 25.4 bits (54), Expect = 2.2
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 398 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 435
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 25.4 bits (54), Expect = 2.2
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 29 IKKMQNDRISFKEKMAKELEKRDQNFKDKI-DALNELL 65
+KKM+ + K A+ + +R ++ KD++ DAL E++
Sbjct: 398 LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVI 435
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 114
Score = 25.0 bits (53), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 42 KMAKELEKRDQNFKDKIDALNELLQKISQAF 72
K K LEK + D+++ LN+ L I Q F
Sbjct: 11 KKLKHLEKSVEKIADQLEELNKELTGIQQGF 41
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 24.6 bits (52), Expect = 3.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 6 AKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA----- 60
A K + KQL + + L++K+K +++ + E + EK + K DA
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 61 -LNELLQKISQAFD 73
LN +Q + + D
Sbjct: 87 SLNRRIQLVEEELD 100
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 24.6 bits (52), Expect = 3.7
Identities = 31/123 (25%), Positives = 53/123 (42%), Gaps = 13/123 (10%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
K Y +S + + NL+++ KI+ D E K + NF++ I EL +
Sbjct: 83 KPIYEAFSNR-IMNLLNKHADKIEVASID-----EAYLDVTNKVEGNFENGI----ELAR 132
Query: 67 KISQAFDDKRDCCLGHEI-PNIETQQAMRDAL--NGINLTQIDSLDDFTNELKRENSKGF 123
KI Q +K + + PN + + D NG+ + + + DF NEL + G
Sbjct: 133 KIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGI 192
Query: 124 ENV 126
+V
Sbjct: 193 GSV 195
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 24.6 bits (52), Expect = 3.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 6 AKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNEL- 64
A K + KQL + + L++K+K +++ + E + EK + K DA ++
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 65 -LQKISQAFDDKRD 77
L + Q F+++ D
Sbjct: 87 SLNRRIQLFEEELD 100
>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
Length = 354
Score = 24.6 bits (52), Expect = 3.7
Identities = 31/123 (25%), Positives = 53/123 (42%), Gaps = 13/123 (10%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
K Y +S + + NL+++ KI+ D E K + NF++ I EL +
Sbjct: 78 KPIYEAFSNR-IMNLLNKHADKIEVASID-----EAYLDVTNKVEGNFENGI----ELAR 127
Query: 67 KISQAFDDKRDCCLGHEI-PNIETQQAMRDAL--NGINLTQIDSLDDFTNELKRENSKGF 123
KI Q +K + + PN + + D NG+ + + + DF NEL + G
Sbjct: 128 KIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGI 187
Query: 124 ENV 126
+V
Sbjct: 188 GSV 190
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 24.3 bits (51), Expect = 4.9
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 21 LIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRD 77
++ +L + + N+ ++FK + LEK+++ D++ + +E + F R+
Sbjct: 206 VVDKLNAQKNAVWNEMMTFKLQTNANLEKKERMVTDEVSSNDEQIDSSGTVFLKSRE 262
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 24.3 bits (51), Expect = 4.9
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 7/69 (10%)
Query: 13 YSEKQLFNL--IHQLERKIKKMQNDRISFKEKMAKEL-EK---RDQNFKDKIDALNELLQ 66
Y EK++ I+QL I + + I+ K+AK L EK RD + IDA + +
Sbjct: 61 YVEKRILEAEEINQLXNSIN-LNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTK 119
Query: 67 KISQAFDDK 75
K +F DK
Sbjct: 120 KFEDSFKDK 128
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 23.9 bits (50), Expect = 6.3
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 8 KDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ- 66
K++ K++ + + + + +++++ K K + LE++++ +DK+ + E +
Sbjct: 180 KEFNLELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLXQIVEFVAN 239
Query: 67 ----KISQAFDDKRD 77
K+ DKR+
Sbjct: 240 YYAVKVEDILSDKRN 254
>pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metalloproteinase
Length = 301
Score = 23.9 bits (50), Expect = 6.3
Identities = 12/51 (23%), Positives = 23/51 (44%)
Query: 34 NDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEI 84
ND ++ + + + +KD+ ALNE + F D D +G ++
Sbjct: 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYFVDDEDFLMGEDV 189
>pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
Length = 464
Score = 23.9 bits (50), Expect = 6.3
Identities = 21/94 (22%), Positives = 35/94 (36%), Gaps = 15/94 (15%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDK--- 57
+ + AK T + Q N+I K +K + D + E+E KD
Sbjct: 105 LKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN 164
Query: 58 ------------IDALNELLQKISQAFDDKRDCC 79
ID+L++ +QK+ A + D C
Sbjct: 165 NIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198
>pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
Length = 622
Score = 23.5 bits (49), Expect = 8.3
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 16 KQLFNLIHQLERKIKKMQNDRISFKE--KMAKELE-KRDQNFKDKIDALNELLQKISQAF 72
++L + IH RK K ++++++FKE KEL + D + KI + Q S
Sbjct: 5 QKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLE- 63
Query: 73 DDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRENSKG 122
D++ + E +A +A ++ L F +RE G
Sbjct: 64 DEEIETFYKMLTQRAEIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAG 113
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 23.5 bits (49), Expect = 8.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 24 QLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
QL+ + KKMQ + +E++ +E R + +K+ A
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
>pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With
Inositol-2-Methylene-1,2-Cyclic-Monophosphonate
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
Length = 624
Score = 23.5 bits (49), Expect = 8.3
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 16 KQLFNLIHQLERKIKKMQNDRISFKE--KMAKELE-KRDQNFKDKIDALNELLQKISQAF 72
++L + IH RK K ++++++FKE KEL + D + KI + Q S
Sbjct: 7 QKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLE- 65
Query: 73 DDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRENSKG 122
D++ + E +A +A ++ L F +RE G
Sbjct: 66 DEEIETFYKMLTQRAEIDRAFEEAAGSAETLSVERLVTFLQHQQREEEAG 115
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 23.5 bits (49), Expect = 8.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 40 KEKMAKELEKRDQNFKDKIDALN 62
K K EL+ NF+D ++ALN
Sbjct: 64 KSKALAELQGLQNNFEDYVNALN 86
>pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 23.5 bits (49), Expect = 8.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 65 LQKISQAFDDKRDCCLGHEIPNIETQQAMRDA--LNGINLTQIDSLDDFTNELKRENSKG 122
L +S +FDD+R+ I ++T M DA +N I L + ++ T + + S
Sbjct: 40 LHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTI-LQYVPQINFTTTAVANQGSSV 98
Query: 123 FE 124
FE
Sbjct: 99 FE 100
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 23.5 bits (49), Expect = 8.3
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNG 99
E+ KE+ K ++ ++++ + E L+K+ + HEI + E ++A+R G
Sbjct: 298 ERRRKEIPKVEKLIEEELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKTG 356
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 686,428
Number of Sequences: 13198
Number of extensions: 24231
Number of successful extensions: 95
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 29
length of query: 130
length of database: 2,899,336
effective HSP length: 78
effective length of query: 52
effective length of database: 1,869,892
effective search space: 97234384
effective search space used: 97234384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)