BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644946|ref|NP_207116.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(251 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 30 0.35
pdb|9RUB|A Chain A, Ribulose-1,5-Bisphosphate Carboxylase(S... 28 1.3
pdb|2RUS|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate Carb... 28 1.3
pdb|1RBA|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate Carb... 28 1.3
pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotra... 27 1.7
pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransfe... 27 1.7
pdb|1A79|A Chain A, Crystal Structure Of The Trna Splicing ... 26 5.0
pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping ... 25 8.5
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping ... 25 8.5
pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bac... 25 8.5
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 29.6 bits (65), Expect = 0.35
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 9 MNAHHVEDMKGLLKKFGQVHHA---------------ENVAFKSVDPQGIVIGYNH-NQT 52
+N H + M+GL K + ++A EN+ K ++ YN N+
Sbjct: 371 LNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAK-------ILSYNRANRA 423
Query: 53 LRIEFNHEVKDPKDYKNAIIELC--------QSVEKTHDLKGVEEEVKAFKES 97
+ I NH++ PK ++ +++ L Q + DLK + + K K++
Sbjct: 424 VAILCNHQIAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDA 476
>pdb|9RUB|A Chain A, Ribulose-1,5-Bisphosphate Carboxylase(Slash)oxyglucose
(Rubisco) (E.C.4.1.1.39) Complexed With Co2, Mg++, And
Substrate Ribulose-1,5-Bisphosphate
pdb|9RUB|B Chain B, Ribulose-1,5-Bisphosphate Carboxylase(Slash)oxyglucose
(Rubisco) (E.C.4.1.1.39) Complexed With Co2, Mg++, And
Substrate Ribulose-1,5-Bisphosphate
Length = 466
Score = 27.7 bits (60), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 4/53 (7%)
Query: 111 HVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAIL 163
HV+C+Y + K Y YV+ A HFA + NVEV +D ++ A++
Sbjct: 23 HVLCAY---IMKPKAGYGYVATAA-HFAAESSTGTNVEVCTTDDFTRGVDALV 71
>pdb|2RUS|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39) Complex With
CO2 And Mg+
pdb|2RUS|A Chain A, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39) Complex With
CO2 And Mg+
pdb|1RUS|A Chain A, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39) Complex With
3-Phosphoglycerate
pdb|5RUB|A Chain A, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39)
pdb|1RUS|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39) Complex With
3-Phosphoglycerate
pdb|5RUB|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate
Carboxylase(Slash)oxygenase) (E.C.4.1.1.39)
Length = 490
Score = 27.7 bits (60), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 4/53 (7%)
Query: 111 HVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAIL 163
HV+C+Y + K Y YV+ A HFA + NVEV +D ++ A++
Sbjct: 47 HVLCAY---IMKPKAGYGYVATAA-HFAAESSTGTNVEVCTTDDFTRGVDALV 95
>pdb|1RBA|B Chain B, Rubisco (Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE)
(E.C.4.1.1.39) Mutant With Asp 193 Replaced By Asn
(D193n)
pdb|1RBA|A Chain A, Rubisco (Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE)
(E.C.4.1.1.39) Mutant With Asp 193 Replaced By Asn
(D193n)
Length = 466
Score = 27.7 bits (60), Expect = 1.3
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 4/53 (7%)
Query: 111 HVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAIL 163
HV+C+Y + K Y YV+ A HFA + NVEV +D ++ A++
Sbjct: 23 HVLCAY---IMKPKAGYGYVATAA-HFAAESSTGTNVEVCTTDDFTRGVDALV 71
>pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 27.3 bits (59), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 123 GKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAK-SAILRKRLRYKTNARFIERG 179
GK++ E + F L N P N +V+F + + +A+ L KT A +++ G
Sbjct: 41 GKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAG 98
>pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJN|B Chain B, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJO|B Chain B, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 27.3 bits (59), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 123 GKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAK-SAILRKRLRYKTNARFIERG 179
GK++ E + F L N P N +V+F + + +A+ L KT A +++ G
Sbjct: 41 GKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAG 98
>pdb|1A79|A Chain A, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|B Chain B, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|C Chain C, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
pdb|1A79|D Chain D, Crystal Structure Of The Trna Splicing Endonuclease From
Methanococcus Jannaschii
Length = 171
Score = 25.8 bits (55), Expect = 5.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 157 KAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEK 192
+ + I++ L+Y + R ERGA DK ++ K
Sbjct: 88 RTRGYIVKTGLKYGADFRLYERGANIDKEHSVYLVK 123
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 4 RIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHN 50
R E + H +K LKK ++H + + SVD + ++ G N N
Sbjct: 186 RYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVD-EPVIYGRNFN 231
>pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKO| Structure Of Mrna Capping Enzyme In Complex With The Cap Analog
Gpppg
Length = 330
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 4 RIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHN 50
R E + H +K LKK ++H + + SVD + ++ G N N
Sbjct: 186 RYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVD-EPVIYGRNFN 231
>pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans
Subsp. Alkalophilus
Length = 362
Score = 25.0 bits (53), Expect = 8.5
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 111 HVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKR-LRY 169
H S + G Y +E L NP +V+F++ + + A++ L+
Sbjct: 32 HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKE 91
Query: 170 KTNARFIERGAEFDKAF-------DSFIEKTGGAGGIKTIRAMQDFHL 210
A ++ G+ KA D+ + + A T+ +Q+ L
Sbjct: 92 GQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQL 139
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,557,514
Number of Sequences: 13198
Number of extensions: 65028
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 10
length of query: 251
length of database: 2,899,336
effective HSP length: 86
effective length of query: 165
effective length of database: 1,764,308
effective search space: 291110820
effective search space used: 291110820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)