BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644949|ref|NP_207119.1| 5*-guanylate kinase (gmk)
[Helicobacter pylori 26695]
(206 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 134 6e-33
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 134 6e-33
pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kina... 62 5e-11
pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 56 3e-09
pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-... 56 3e-09
pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3) 31 0.089
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 31 0.12
pdb|3AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1... 29 0.44
pdb|1DVR|A Chain A, Nucleoside Monophosphate Kinase, Myokin... 29 0.44
pdb|1AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1... 29 0.44
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 28 0.58
pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free E... 28 0.99
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 28 0.99
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Co... 28 0.99
pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus 28 0.99
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 27 1.3
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 27 1.3
pdb|1QHX|A Chain A, Chloramphenicol Phosphotransferase In C... 27 2.2
pdb|1CJL| Crystal Structure Of A Cysteine Protease Proform 27 2.2
pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex ... 26 2.9
pdb|1QD9|A Chain A, Bacillus Subtilis Yabj >gi|6573366|pdb|... 26 2.9
pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L 26 2.9
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 26 3.8
pdb|1QHN|A Chain A, Chloramphenicol Phosphotransferase From... 26 3.8
pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRAN... 25 4.9
pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts B... 25 4.9
pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complex... 25 4.9
pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter P... 25 4.9
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm D... 25 6.4
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 25 6.4
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 25 6.4
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 25 8.4
pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1... 25 8.4
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 134 bits (338), Expect = 6e-33
Identities = 78/171 (45%), Positives = 113/171 (65%), Gaps = 4/171 (2%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTH-FSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIE 66
+++SGPSG GKSTL K L + P + FS+S+TTR PR GEV+G YNFVS +EFK I+
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 64
Query: 67 KGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKK-HYPNACSVFISTK 125
+F+EWA +YYG++ V++ K GK I DID+QG + +K NA +FI+
Sbjct: 65 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 124
Query: 126 NQEILKERLLLRGTDSKETIEKRLINAYKEMQCLE--SFDYLIINEDLEKS 174
+ E LK+RL RGT+++E+I KRL A E+ E + D +I+N+DL+K+
Sbjct: 125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKA 175
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 134 bits (338), Expect = 6e-33
Identities = 78/171 (45%), Positives = 113/171 (65%), Gaps = 4/171 (2%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTH-FSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIE 66
+++SGPSG GKSTL K L + P + FS+S+TTR PR GEV+G YNFVS +EFK I+
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 67 KGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKK-HYPNACSVFISTK 125
+F+EWA +YYG++ V++ K GK I DID+QG + +K NA +FI+
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 126 NQEILKERLLLRGTDSKETIEKRLINAYKEMQCLE--SFDYLIINEDLEKS 174
+ E LK+RL RGT+++E+I KRL A E+ E + D +I+N+DL+K+
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKA 174
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 62.0 bits (149), Expect = 5e-11
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIP-KTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIE 66
L+L G G G+ + L K P + + + TTR P++ E +G +Y FVS ++ Q I
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDIS 67
Query: 67 KGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKN 126
++LE+ + YGT + K ++G I I D++ Q ++L+ VFI+
Sbjct: 68 NNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPT 127
Query: 127 QEILKERLLLRGTDSKETIEKRLINAYKEMQCLES-----FDYLIINEDLEKS 174
+ G + E++++ KE L+ FD IIN +++++
Sbjct: 128 --------ITPGLNEDESLQR----LQKESDILQRTYAHYFDLTIINNEIDET 168
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 56.2 bits (134), Expect = 3e-09
Identities = 39/137 (28%), Positives = 69/137 (49%), Gaps = 5/137 (3%)
Query: 39 TTRKPREGEVDGLHYNFVSE-EEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKI 97
TTR RE E+DG Y+FVS E+ ++ I+ +F+E ++H YGTS V + ++GK
Sbjct: 137 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 196
Query: 98 VIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYK-EM 156
I D+ L+ + + ++FI ++ E + E + ++E K A K E
Sbjct: 197 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE---INKRITEEQARKAFDRATKLEQ 253
Query: 157 QCLESFDYLIINEDLEK 173
+ E F ++ + E+
Sbjct: 254 EFTECFSAIVEGDSFEE 270
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 56.2 bits (134), Expect = 3e-09
Identities = 39/137 (28%), Positives = 69/137 (49%), Gaps = 5/137 (3%)
Query: 39 TTRKPREGEVDGLHYNFVSE-EEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKI 97
TTR RE E+DG Y+FVS E+ ++ I+ +F+E ++H YGTS V + ++GK
Sbjct: 143 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 202
Query: 98 VIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKETIEKRLINAYK-EM 156
I D+ L+ + + ++FI ++ E + E + ++E K A K E
Sbjct: 203 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE---INKRITEEQARKAFDRATKLEQ 259
Query: 157 QCLESFDYLIINEDLEK 173
+ E F ++ + E+
Sbjct: 260 EFTECFSAIVEGDSFEE 276
>pdb|3ADK| Adenylate Kinase (E.C.2.7.4.3)
Length = 195
Score = 31.2 bits (69), Expect = 0.089
Identities = 42/164 (25%), Positives = 71/164 (42%), Gaps = 19/164 (11%)
Query: 7 LLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTR-KPREGEVDGLHYNFVSEEEFKQGI 65
+ ++ GP G+GK T + + +K TH S R + G G + + +
Sbjct: 12 IFVVGGP-GSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARG--------KMLSEIM 62
Query: 66 EKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDV-QGHEILKKHYPNACSVFIST 124
EKGQ + V + V+ + K I + +V QG E +K +++
Sbjct: 63 EKGQLVPLETVLDMLRDAMVAKVDTS-KGFLIDGYPREVKQGEEFERKIGQPTLLLYVDA 121
Query: 125 KNQEILKERLLLRGT------DSKETIEKRLINAYKEMQCLESF 162
E + +RLL RG D++ETI+KRL YK + + +F
Sbjct: 122 -GPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 30.8 bits (68), Expect = 0.12
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 1/60 (1%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEK 67
+ L GP GAGKST+ + L +++ + K R G G ++ EE F+ EK
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK-RTGADVGWVFDLEGEEGFRDREEK 65
>pdb|3AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Engineered:
Yes; Mutation: I213f; Heterogen: Ap5a; Heterogen:
Imidazole
Length = 221
Score = 28.9 bits (63), Expect = 0.44
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTR 41
++L GP GAGK T LQE+ H + R
Sbjct: 8 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR 41
>pdb|1DVR|A Chain A, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
Molecule: Adenylate Kinase; Chain: A, B; Synonym:
Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
Engineered: Yes; Mutation: D89v, R165i
pdb|1DVR|B Chain B, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
Molecule: Adenylate Kinase; Chain: A, B; Synonym:
Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
Engineered: Yes; Mutation: D89v, R165i
Length = 220
Score = 28.9 bits (63), Expect = 0.44
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTR 41
++L GP GAGK T LQE+ H + R
Sbjct: 7 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR 40
>pdb|1AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
Ap5a; Heterogen: Imidazole
pdb|2AKY| Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
Adenylate Kinase; Chain: Null; Synonym: Atp:amp
Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
Ap5a; Heterogen: Mg
Length = 221
Score = 28.9 bits (63), Expect = 0.44
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTR 41
++L GP GAGK T LQE+ H + R
Sbjct: 8 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR 41
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 28.5 bits (62), Expect = 0.58
Identities = 12/41 (29%), Positives = 21/41 (50%)
Query: 3 NDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKP 43
N+ L++L G G GK+T+ + ++ F + TT P
Sbjct: 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 27.7 bits (60), Expect = 0.99
Identities = 11/23 (47%), Positives = 16/23 (68%)
Query: 7 LLILSGPSGAGKSTLTKYLQEKI 29
++ + GPSGAGK TL K + E +
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEAL 29
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 27.7 bits (60), Expect = 0.99
Identities = 14/46 (30%), Positives = 24/46 (51%)
Query: 54 NFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVI 99
+FV+ E Q + K + A+++ Y +IP E+ KE +I I
Sbjct: 81 DFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYI 126
>pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With
Cytidine-Di- Phosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
Length = 227
Score = 27.7 bits (60), Expect = 0.99
Identities = 11/23 (47%), Positives = 16/23 (68%)
Query: 7 LLILSGPSGAGKSTLTKYLQEKI 29
++ + GPSGAGK TL K + E +
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEAL 29
>pdb|1TFE| Dimerization Domain Of Ef-Ts From T. Thermophilus
Length = 145
Score = 27.7 bits (60), Expect = 0.99
Identities = 14/46 (30%), Positives = 24/46 (51%)
Query: 54 NFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVI 99
+FV+ E Q + K + A+++ Y +IP E+ KE +I I
Sbjct: 27 DFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYI 72
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 27.3 bits (59), Expect = 1.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 3 NDFNLLILSGPSGAGKSTL----TKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSE 58
N ++ ++ GP+G+GKSTL T +L+ + +F T K + HY V
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE---PAELYHYGIVRT 87
Query: 59 EEFKQGIEKGQFLE 72
+ Q +++ LE
Sbjct: 88 FQTPQPLKEMTVLE 101
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.3 bits (59), Expect = 1.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 3 NDFNLLILSGPSGAGKSTL----TKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSE 58
N ++ ++ GP+G+GKSTL T +L+ + +F T K + HY V
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE---PAELYHYGIVRT 87
Query: 59 EEFKQGIEKGQFLE 72
+ Q +++ LE
Sbjct: 88 FQTPQPLKEMTVLE 101
>pdb|1QHX|A Chain A, Chloramphenicol Phosphotransferase In Complex With Atp
From Streptomyces Venezuelae
pdb|1QHY|A Chain A, Chloramphenicol Phosphotransferase From Streptomyces
Venezuelae In Complex With Atpgammas And
Chloramphenicol
pdb|1QHS|A Chain A, Chloramphenicol Phosphotransferase In Complex With
Chloramphenicol From Streptomyces Venezuelae
pdb|1GRQ|A Chain A, Chloramphenicol Phosphotransferase In Complex With
P-Amino-Chloramphenicol From Streptomyces Venezuelae
pdb|1GRR|A Chain A, Chloramphenicol Phosphotransferase In Complex With
2-Nac-Chloramphenicol From Streptomyces Venezuelae
Length = 178
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 7 LLILSGPSGAGKSTLTKYLQEKIPK 31
++IL+G S AGKS + + LQ +P+
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPE 29
>pdb|1CJL| Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 26.6 bits (57), Expect = 2.2
Identities = 15/77 (19%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Query: 67 KGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKN 126
+ Q+ +W +HN YG ++ +A+ E + + ++ Q + K + A + F +
Sbjct: 5 EAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTS 64
Query: 127 QEILKERLLLRGTDSKE 143
+E R ++ G +++
Sbjct: 65 EEF---RQVMNGLQNRK 78
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 26.2 bits (56), Expect = 2.9
Identities = 32/140 (22%), Positives = 57/140 (39%), Gaps = 22/140 (15%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEK 67
+++SG +GK T + ++ K H S R E+ N +EF +EK
Sbjct: 8 VMISGAPASGKGTQCELIKTKYQLAHISAGDLLR----AEIAAGSENGKRAKEF---MEK 60
Query: 68 GQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQ 127
GQ + IV N V++ L++ D Q + L YP + S ++ +
Sbjct: 61 GQLVPDEIVVN--------MVKERLRQP-------DAQENGWLLDGYPRSYSQAMALETL 105
Query: 128 EILKERLLLRGTDSKETIEK 147
EI + +L + +E+
Sbjct: 106 EIRPDTFILLDVPDELLVER 125
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 26.2 bits (56), Expect = 2.9
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Query: 68 GQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEI 109
G + + IV+N +Y + +IP+ + G++V DI Q H++
Sbjct: 14 GPYSQGIIVNNMFYSSGQIPLTPS---GEMVNGDIKEQTHQV 52
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 26.2 bits (56), Expect = 2.9
Identities = 13/62 (20%), Positives = 30/62 (47%)
Query: 67 KGQFLEWAIVHNHYYGTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKN 126
+ Q+ +W +HN YG ++ +A+ E + + ++ Q + K + A + F +
Sbjct: 9 EAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTS 68
Query: 127 QE 128
+E
Sbjct: 69 EE 70
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 25.8 bits (55), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 14/53 (26%)
Query: 10 LSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEV--DGLHYNFVSEEE 60
+ GPSG+GKST+ ++ KP EGEV D + N + ++E
Sbjct: 36 IMGPSGSGKSTM------------LNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76
>pdb|1QHN|A Chain A, Chloramphenicol Phosphotransferase From Streptomyces
Venezuelae
Length = 178
Score = 25.8 bits (55), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPK 31
+IL+G S AGKS + + LQ +P+
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPE 29
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 25.4 bits (54), Expect = 4.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 18 KSTLTKYLQEKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVH 77
++ L KY ++ + H LS PR G V Y S E+F + IEK Q + +VH
Sbjct: 87 ENCLRKYRRQCMQDMHQKLSFG---PRYGFV----YELESGEQFLETIEKEQKITTIVVH 139
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 25.4 bits (54), Expect = 4.9
Identities = 42/190 (22%), Positives = 62/190 (32%), Gaps = 57/190 (30%)
Query: 8 LILSGPSGAGKST---------LTKYLQEKIPKTHFSLSTTTR-KPREGEVDGL------ 51
LI++GP+ GKST L Y+ +P + R R G D L
Sbjct: 610 LIITGPNXGGKSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRST 669
Query: 52 ----------------HYNFVSEEEFKQGIE--KGQFLEWAIVHN-------------HY 80
Y+ V +E +G G L WA N HY
Sbjct: 670 FXVEXTETANILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 729
Query: 81 YGTSKIPVE---------KALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILK 131
+ +++P + AL+ G + F VQ K Y A + + I +
Sbjct: 730 FELTQLPEKXEGVANVHLDALEHGDTIAFXHSVQ-DGAASKSYGLAVAALAGVPKEVIKR 788
Query: 132 ERLLLRGTDS 141
R LR +S
Sbjct: 789 ARQKLRELES 798
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Adp
Length = 217
Score = 25.4 bits (54), Expect = 4.9
Identities = 11/23 (47%), Positives = 16/23 (68%)
Query: 7 LLILSGPSGAGKSTLTKYLQEKI 29
L++L G GAGKST ++ L E +
Sbjct: 11 LIVLEGVDGAGKSTQSRKLVEAL 33
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
Length = 330
Score = 25.4 bits (54), Expect = 4.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 8 LILSGPSGAGKSTLTKYLQEKIPK 31
+I+ G +G+GK+T K + E IPK
Sbjct: 174 VIVCGGTGSGKTTYIKSIXEFIPK 197
>pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
Length = 297
Score = 25.0 bits (53), Expect = 6.4
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 126 NQEILKERLLLRGTDSKETIEKRLINAYKEMQCL----ESFDYLIINEDLE 172
N +L +R+L + +KE E+R+ N ++E + + +YL I +DLE
Sbjct: 149 NDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLE 199
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 25.0 bits (53), Expect = 6.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 7 LLILSGPSGAGKSTL 21
+L L GP+GAGKSTL
Sbjct: 28 ILHLVGPNGAGKSTL 42
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 25.0 bits (53), Expect = 6.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%)
Query: 10 LSGPSGAGKSTLTKYLQEKIPKTHFSLSTTTRKPREGEV--DGLHYNFVSEEE 60
+ GPSG+GKS T ++ KP EGEV D + N + ++E
Sbjct: 36 IXGPSGSGKS------------TXLNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 4 DFNLLILSGPSGAGKSTLTKYL 25
D +IL GPSG GK+T + +
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMI 49
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 24.6 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 91 ALKEGKIVIFDIDVQGHEILKKHYPN 116
AL+E ++ ID + EI++KHY N
Sbjct: 82 ALREYPVLNTSIDDETEEIIQKHYYN 107
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,256,001
Number of Sequences: 13198
Number of extensions: 52511
Number of successful extensions: 216
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 35
length of query: 206
length of database: 2,899,336
effective HSP length: 84
effective length of query: 122
effective length of database: 1,790,704
effective search space: 218465888
effective search space used: 218465888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)