BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644951|ref|NP_207121.1| membrane bound endonuclease
(nuc) [Helicobacter pylori 26695]
(180 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BYS|A Chain A, Crystal Structure Of Nuc Complexed With... 57 1e-09
pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycer... 28 0.81
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycer... 28 0.81
pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5) >gi|49... 27 1.8
pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of G... 27 1.8
pdb|1MEE|A Chain A, Mesentericopeptidase (E.C.3.4.21.14) Pe... 26 2.3
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 26 2.3
pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propept... 26 2.3
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 26 2.3
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilib... 25 4.0
pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate H... 25 4.0
pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of... 25 4.0
pdb|4HCK| Human Hck Sh3 Domain, Nmr, 25 Structures >gi|33... 25 5.2
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 24 8.9
>pdb|1BYS|A Chain A, Crystal Structure Of Nuc Complexed With Tungstate
pdb|1BYR|A Chain A, Crystal Structure Of A Phospholipase D Family Member, Nuc
From Salmonella Typhimurium
Length = 155
Score = 57.0 bits (136), Expect = 1e-09
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 41 LVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHHNKQSTIGYLDK 100
++S I +A+ S+++ YSFT DI +A+ + RG+ V+I+ D N +++I ++
Sbjct: 19 VLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGN--TGRASIAAMNY 76
Query: 101 YPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDDKIVFLGSANWSKNAFENNYE 152
N+ G+ + + + I H KV I+D+ V GS N++K A N E
Sbjct: 77 IANS------GIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSE 122
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 27.7 bits (60), Expect = 0.81
Identities = 24/112 (21%), Positives = 46/112 (40%), Gaps = 20/112 (17%)
Query: 41 LVSGISNAR--ESVKIAIYSFTHRDIARAIKSVASR------------GIKVQIIYDYES 86
L +G+S A +V IA++ F D + I + S+ G+ + +D+E
Sbjct: 58 LTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 117
Query: 87 NHHNKQSTI------GYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDD 132
HH + ++ G YPN + ++ + +M +A+ DD
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDD 169
>pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
Length = 281
Score = 27.7 bits (60), Expect = 0.81
Identities = 24/112 (21%), Positives = 46/112 (40%), Gaps = 20/112 (17%)
Query: 41 LVSGISNAR--ESVKIAIYSFTHRDIARAIKSVASR------------GIKVQIIYDYES 86
L +G+S A +V IA++ F D + I + S+ G+ + +D+E
Sbjct: 58 LTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQ 117
Query: 87 NHHNKQSTI------GYLDKYPNTKVCLLKGLKAKNGNYYGIMHQKVAIIDD 132
HH + ++ G YPN + ++ + +M +A+ DD
Sbjct: 118 THHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDD 169
>pdb|1GOF| Galactose Oxidase (E.C.1.1.3.9) (Ph 4.5)
pdb|1GOG| Galactose Oxidase (E.C.1.1.3.9) (Ph 7.0)
pdb|1GOH| Galactose Oxidase (E.C.1.1.3.9) (Apo Form)
Length = 639
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/41 (36%), Positives = 19/41 (45%)
Query: 124 HQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETIL 164
+Q A + D VF +WS FE N EV + T T L
Sbjct: 272 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 312
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/41 (36%), Positives = 19/41 (45%)
Query: 124 HQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETIL 164
+Q A + D VF +WS FE N EV + T T L
Sbjct: 289 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329
>pdb|1MEE|A Chain A, Mesentericopeptidase (E.C.3.4.21.14) Peptidyl Peptide
Hydrolase Complex With Eglin-C
Length = 275
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 38 LNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHHNKQ---ST 94
+N + ISN + + +++ T + A+K+V + + I+ + + ST
Sbjct: 108 INGIEWAISNNMDVINMSLGGPTG---STALKTVVDKAVSSGIVVAAAAGNEGSSGSTST 164
Query: 95 IGYLDKYPNT 104
+GY KYP+T
Sbjct: 165 VGYPAKYPST 174
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 3 NKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESV 52
NK+K ++G +V VG NS + P E D NSLV S + V
Sbjct: 399 NKYKTVIGDNVFVG-------SNSTIIAPVELGD--NSLVGAGSTITKDV 439
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 38 LNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYDYESNHHNKQ---ST 94
+N + ISN + + +++ T + A+K+V + + I+ + + ST
Sbjct: 108 INGIEWAISNNMDVINMSLGGPTG---STALKTVVDKAVSSGIVVAAAAGNEGSSGSTST 164
Query: 95 IGYLDKYPNT 104
+GY KYP+T
Sbjct: 165 VGYPAKYPST 174
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 3 NKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESV 52
NK+K ++G +V VG NS + P E D NSLV S + V
Sbjct: 390 NKYKTVIGNNVFVG-------SNSTIIAPVELGD--NSLVGAGSTITKDV 430
>pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of
2'-Phosphoglyceate And Phosphoenolpyruvate
pdb|1EBH|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|1EBH|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
Complexed With Mg 2+
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved
2'-Phosphoglycerate And Phosphoenolpyruvate
pdb|1EBG|A Chain A, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
pdb|1EBG|B Chain B, Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase)
(Apo Form)
Length = 436
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (42%)
Query: 5 FKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSF 59
F K G+ ++ L V K + + DAL V+ I ES+K A SF
Sbjct: 309 FFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSF 363
>pdb|4ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Holo)
pdb|5ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Calcium
pdb|6ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Phosphoglycolic Acid And Zinc
pdb|7ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With 2-Phospho-D-Glyceric Acid And Magnesium
pdb|3ENL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) (Apo)
pdb|1ELS| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complexed
With Phosphonoacetohydroxamate And Manganese
pdb|1NEL| Enolase (E.C.4.2.1.11) (2-Phospho-D-Glycerate Hydrolase) Complex
With Orthophosphate, Fluoride And Magnesium
Length = 436
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (42%)
Query: 5 FKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSF 59
F K G+ ++ L V K + + DAL V+ I ES+K A SF
Sbjct: 309 FFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSF 363
>pdb|1L8P|A Chain A, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-Phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 25.4 bits (54), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (42%)
Query: 5 FKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSF 59
F K G+ ++ L V K + + DAL V+ I ES+K A SF
Sbjct: 309 FFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSF 363
>pdb|4HCK| Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK| Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 25.0 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 68 IKSVASRGIKVQIIYDYESNHHNKQS 93
I+ S I V +YDYE+ HH S
Sbjct: 2 IREAGSEDIIVVALYDYEAIHHEDLS 27
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 24.3 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 129 IIDDKIVFLGSANWSKNAFEN-NYEVLLKTDDTET 162
I++DKIVFLGS + N N + + + DD++T
Sbjct: 597 ILNDKIVFLGSNIKNTNGIGNVSTTIDQRKDDSKT 631
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,021
Number of Sequences: 13198
Number of extensions: 38150
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)