BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644665|ref|NP_206834.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(91 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesylt... 24 2.4
pdb|1PVA|A Chain A, Parvalbumin (Pike, Pi 5.0, Alpha Compon... 23 4.1
pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX 23 5.4
pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox... 23 5.4
pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron R... 22 9.2
pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron R... 22 9.2
pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesy... 22 9.2
pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Trans... 22 9.2
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed W... 22 9.2
>pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
Length = 382
Score = 24.3 bits (51), Expect = 2.4
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 43 KALTSSIHRDGEGVCGVYP-----YDIARHRAA---WVRDKAKALEFPLKLLVEEIK 91
K+L +H + + + Y + HR W+RD ++ LEF +L ++ K
Sbjct: 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198
>pdb|1PVA|A Chain A, Parvalbumin (Pike, Pi 5.0, Alpha Component) Complexed With
Two Calcium Ions (Synchrotron X-Ray Diffraction)
pdb|1PVA|B Chain B, Parvalbumin (Pike, Pi 5.0, Alpha Component) Complexed With
Two Calcium Ions (Synchrotron X-Ray Diffraction)
pdb|2PAS| Parvalbumin (Alpha Lineage, Pi 5.0) Complexed With Calcium (Nmr, 9
Structures)
pdb|3PAT| Parvalbumin (Alpha Lineage, Pi 5.0) Complexed With Calcium (Nmr,
Average Structure)
Length = 110
Score = 23.5 bits (49), Expect = 4.1
Identities = 13/46 (28%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 25 EFVISALR-DFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHRA 69
+FV+ + D D + E KA + +DG+G G+ ++ H A
Sbjct: 65 KFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA 110
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 23.1 bits (48), Expect = 5.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 17 VDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRD 52
V DP + F I + E KA T SI+RD
Sbjct: 32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At
1.8 Angstrom Resolution And Biochemical
Characterizations Of The A128v Mutant Implicated In
Chronic Granulomatous Disease
Length = 213
Score = 23.1 bits (48), Expect = 5.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 17 VDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRD 52
V DP + F I + E KA T SI+RD
Sbjct: 32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
>pdb|1ATT|A Chain A, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 421
Score = 22.3 bits (46), Expect = 9.2
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISAL-RDFFDKSLEEAKALTSSIHR------DGEGVCG 58
I T ++ V P EF + L + K L ++K + + DGE
Sbjct: 182 ISNKTEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSV 241
Query: 59 VYPYDIARHRAAWVRDKAKALEFPLK 84
+ Y ++ R V + + LE P K
Sbjct: 242 LMMYQESKFRYRRVAESTQVLELPFK 267
>pdb|1ATT|B Chain B, Antithrombin Iii (Atiii) (Synchrotron Radiation)
Length = 411
Score = 22.3 bits (46), Expect = 9.2
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISAL-RDFFDKSLEEAKALTSSIHR------DGEGVCG 58
I T ++ V P EF + L + K L ++K + + DGE
Sbjct: 169 ISNKTEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSV 228
Query: 59 VYPYDIARHRAAWVRDKAKALEFPLK 84
+ Y ++ R V + + LE P K
Sbjct: 229 LMMYQESKFRYRRVAESTQVLELPFK 254
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 315
Score = 22.3 bits (46), Expect = 9.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 62 YDIARHRAA---WVRDKAKALEFPLKLLVEEIK 91
Y + HR W++D ++ LEF +L ++ K
Sbjct: 112 YQVWHHRRVLVEWLKDPSQELEFIADILNQDAK 144
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 22.3 bits (46), Expect = 9.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 62 YDIARHRAA---WVRDKAKALEFPLKLLVEEIK 91
Y + HR W++D ++ LEF +L ++ K
Sbjct: 122 YQVWHHRRVLVEWLKDPSQELEFIADILNQDAK 154
>pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated K-
Ras4b Peptide Product And Farnesyl Diphosphate Substrate
Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K- Ras4b Peptide Product
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
Length = 377
Score = 22.3 bits (46), Expect = 9.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 62 YDIARHRAA---WVRDKAKALEFPLKLLVEEIK 91
Y + HR W++D ++ LEF +L ++ K
Sbjct: 166 YQVWHHRRVLVEWLKDPSQELEFIADILNQDAK 198
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,106
Number of Sequences: 13198
Number of extensions: 16063
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 2,899,336
effective HSP length: 67
effective length of query: 24
effective length of database: 2,015,070
effective search space: 48361680
effective search space used: 48361680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)