BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644952|ref|NP_207122.1| outer membrane protein
(omp10) [Helicobacter pylori 26695]
(254 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Y... 29 0.60
pdb|1H9P|A Chain A, Crystal Structure Of Dioclea Guianensis... 28 1.3
pdb|1H9W|A Chain A, Native Dioclea Guianensis Seed Lectin >... 27 1.8
pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase >gi|1865554... 26 3.9
pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Diki... 26 3.9
pdb|1DIK| Pyruvate Phosphate Dikinase 26 3.9
pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 26 3.9
pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin ... 26 3.9
pdb|1FZD|A Chain A, Structure Of Recombinant Alphaec Domain... 26 3.9
pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Diki... 26 3.9
pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dik... 26 3.9
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Bind... 26 5.1
pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr... 25 6.7
pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Bind... 25 6.7
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain
Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain
Pair
Length = 316
Score = 28.9 bits (63), Expect = 0.60
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 57 TNIHEVREVTNYQTGYTNIITSVNSVKKL-TNMGSNGI 93
TN HEVR++T ++ YT++I ++ +V L T + SN I
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRI 44
>pdb|1H9P|A Chain A, Crystal Structure Of Dioclea Guianensis Seed Lectin
Length = 237
Score = 27.7 bits (60), Expect = 1.3
Identities = 32/108 (29%), Positives = 48/108 (43%), Gaps = 6/108 (5%)
Query: 18 VGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSINLMTNIHEVREVTNYQTGY---TN 74
VG + +++ +AK SA S+T + V+Y N++ VR + TG TN
Sbjct: 47 VGTAHISYNSVAKRLSAVVSYTGSSSTTVSYDVDLNNVLP--EWVRVGLSATTGLYKETN 104
Query: 75 IITSVNSVKKL-TNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQG 121
I S + KL TN ++ L +N F K L L+ A D G
Sbjct: 105 TILSWSFTSKLKTNSIADANSLHFSFNQFSQNPKDLILQSDATTDSDG 152
>pdb|1H9W|A Chain A, Native Dioclea Guianensis Seed Lectin
pdb|1H9W|B Chain B, Native Dioclea Guianensis Seed Lectin
Length = 237
Score = 27.3 bits (59), Expect = 1.8
Identities = 32/108 (29%), Positives = 48/108 (43%), Gaps = 6/108 (5%)
Query: 18 VGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSINLMTNIHEVREVTNYQTGY---TN 74
VG + +++ +AK SA S+T + V+Y N++ VR + TG TN
Sbjct: 47 VGTAHISYNSVAKRLSAVVSYTGSSSTTVSYDVDLNNVLP--EWVRVGLSATTGLYKETN 104
Query: 75 IITSVNSVKKL-TNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLDWQG 121
I S + KL TN ++ L +N F K L L+ A D G
Sbjct: 105 TILSWSFTSKLKTNSIADANSLHFSFNQFSQNPKDLILQGDATTDSDG 152
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 78 SVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLD 118
++N+VK +G+ GIGL + FF D+I+ +R D
Sbjct: 545 TLNAVK----LGAEGIGLCRTEHMFFEADRIMKIRKMILSD 581
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 78 SVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLD 118
++N+VK +G+ GIGL + FF D+I+ +R D
Sbjct: 545 TLNAVK----LGAEGIGLCRTEHMFFEADRIMKIRKMILSD 581
>pdb|1DIK| Pyruvate Phosphate Dikinase
Length = 874
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 78 SVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLD 118
++N+VK +G+ GIGL + FF D+I+ +R D
Sbjct: 546 TLNAVK----LGAEGIGLCRTEHMFFEADRIMKIRKMILSD 582
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
Length = 295
Score = 26.2 bits (56), Expect = 3.9
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 15 KMLVGASLLTHALIAKEESAAPSWTKNLYMGVNYQTGSINLMTNIHEVREVTNYQTGYTN 74
K + G+ L A + +S SWT+ + + + M++ +V + + TGY N
Sbjct: 41 KGIWGSGLSVSAQLGVRDSNEASWTQVVEV--------LEFMSDASDVPILLDADTGYGN 92
Query: 75 IITSVNSVKKLTNMGSNG 92
+ V+KL + G G
Sbjct: 93 FNNARRLVRKLEDRGVAG 110
>pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0 Angstroms
Length = 1046
Score = 26.2 bits (56), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 211 FVDEHEFEIGFKFPTINNKYYTTDALKVQMRR 242
F+D+ EF IG K+ + + YT +V + R
Sbjct: 748 FLDKGEFYIGSKYKKVVYRQYTDSTFRVPVER 779
>pdb|1FZD|A Chain A, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|B Chain B, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|C Chain C, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|D Chain D, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|E Chain E, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|F Chain F, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|G Chain G, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|H Chain H, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
Length = 201
Score = 26.2 bits (56), Expect = 3.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 123 GMRYPKGYYGGNNMITYGVGVDAVWNFFQGSFY 155
G+ YP G Y N Y + VW F+G+ Y
Sbjct: 154 GIYYPGGSYDPRNNSPYEIENGVVWVSFRGADY 186
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 78 SVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLD 118
++N+VK +G+ GIGL + FF D+I+ +R D
Sbjct: 545 TLNAVK----LGAEGIGLCRTEHMFFEADRIMKIRKMILSD 581
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 78 SVNSVKKLTNMGSNGIGLVMGYNHFFHPDKILGLRYFAFLD 118
++N+VK +G+ GIGL + FF D+I+ +R D
Sbjct: 545 TLNAVK----LGAEGIGLCRTEHMFFEADRIMKIRKMILSD 581
>pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
Length = 194
Score = 25.8 bits (55), Expect = 5.1
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 48 YQTGSINLMTNIHEVREVTNYQT----GYTNIITSVNSVKKLTNMGSNGIGLVMGYNH 101
Y+T SIN N E + + Y G N S+N V ++ + +N + ++ + H
Sbjct: 107 YKTNSINEKXNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTH 164
>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
Length = 194
Score = 25.4 bits (54), Expect = 6.7
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 48 YQTGSINLMTNIHEVREVTNYQT----GYTNIITSVNSVKKLTNMGSNGIGLVMGYNH 101
Y+T SIN N E + + Y G N S+N V ++ + +N + ++ + H
Sbjct: 107 YKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTH 164
>pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|B Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
pdb|1JT6|E Chain E, Crystal Structure Of The Multidrug Binding Protein Qacr
Bound To Dequalinium
Length = 188
Score = 25.4 bits (54), Expect = 6.7
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 48 YQTGSINLMTNIHEVREVTNYQT----GYTNIITSVNSVKKLTNMGSNGIGLVMGYNH 101
Y+T SIN N E + + Y G N S+N V ++ + +N + ++ + H
Sbjct: 107 YKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGIVTFTH 164
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,620,667
Number of Sequences: 13198
Number of extensions: 72790
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 14
length of query: 254
length of database: 2,899,336
effective HSP length: 86
effective length of query: 168
effective length of database: 1,764,308
effective search space: 296403744
effective search space used: 296403744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)