BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644955|ref|NP_207125.1| flagellar protein G (flaG)
[Helicobacter pylori 26695]
         (180 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JNB|A  Chain A, Connector Protein From Bacteriophage Ph...    27  1.8
pdb|1BJQ|B  Chain B, The Dolichos Biflorus Seed Lectin In Co...    27  1.8
pdb|1FOU|A  Chain A, Connector Protein From Bacteriophage Ph...    27  1.8
pdb|1G7Y|D  Chain D, The Crystal Structure Of The 58kd Veget...    26  2.3
pdb|1MBS|    Myoglobin (Met)                                       26  3.1
pdb|1KSI|A  Chain A, Crystal Structure Of A Eukaryotic (Pea ...    25  5.2
pdb|1LXM|A  Chain A, Crystal Structure Of Streptococcus Agal...    25  5.2
pdb|1QHQ|A  Chain A, Auracyanin, A Blue Copper Protein From ...    25  6.8

>pdb|1JNB|A Chain A, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|B Chain B, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|C Chain C, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|D Chain D, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|E Chain E, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|F Chain F, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|G Chain G, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|H Chain H, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|I Chain I, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|J Chain J, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|K Chain K, Connector Protein From Bacteriophage Phi29
 pdb|1JNB|L Chain L, Connector Protein From Bacteriophage Phi29
 pdb|1IJG|A Chain A, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|B Chain B, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|C Chain C, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|D Chain D, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|E Chain E, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|F Chain F, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|G Chain G, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|H Chain H, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|I Chain I, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|J Chain J, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|K Chain K, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1IJG|L Chain L, Structure Of The Bacteriophage Phi29 Head-Tail Connector
           Protein
 pdb|1H5W|B Chain B, 2.1a Bacteriophage Phi-29 Connector
 pdb|1H5W|C Chain C, 2.1a Bacteriophage Phi-29 Connector
 pdb|1H5W|A Chain A, 2.1a Bacteriophage Phi-29 Connector
          Length = 309

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 47  KTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLK----NG 102
           K +  FI  L    +  Y LF+ E +   +         H+ GY+G YK+P +     NG
Sbjct: 19  KRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNG 78

Query: 103 G----------ETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGF 152
                       T+ +A   +  +EF+L++ + ++ E +   + +     +     L+ F
Sbjct: 79  ALSGQRDVYNQATVFRAASPVYQKEFKLYN-YRDMKEEDMGVVIYNNDMAFPTTPTLELF 137

Query: 153 ISKDKEFIDVL 163
            ++  E  +++
Sbjct: 138 AAELAELKEII 148



>pdb|1BJQ|B Chain B, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|H Chain H, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|G Chain G, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1LU1|   The Structure Of The Dolichos Biflorus Seed Lectin In Complex With
           The Forssman Disaccharide
 pdb|1LU2|A Chain A, Dolichos Biflorus Seed Lectin In Complex With The Blood
           Group A Trisaccharide
 pdb|1LU2|B Chain B, Dolichos Biflorus Seed Lectin In Complex With The Blood
           Group A Trisaccharide
 pdb|1BJQ|C Chain C, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|D Chain D, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|E Chain E, The Dolichos Biflorus Seed Lectin In Complex With Adenine
 pdb|1BJQ|F Chain F, The Dolichos Biflorus Seed Lectin In Complex With Adenine
          Length = 253

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 11/48 (22%), Positives = 24/48 (49%)

Query: 89  GYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAIA 136
           GYLG++ +    N  +T+    + ++   +     H+ +  N+ K+IA
Sbjct: 103 GYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIA 150



>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
 pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
          Length = 309

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 47  KTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLK----NG 102
           K +  FI  L    +  Y LF+ E +   +         H+ GY+G YK+P +     NG
Sbjct: 19  KRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNG 78

Query: 103 G----------ETILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGF 152
                       T+ +A   +  +EF+L++ + ++ E +   + +     +     L+ F
Sbjct: 79  ALSGQRDVYNQATVFRAASPVYQKEFKLYN-YRDMKEEDMGVVIYNNDMAFPTTPTLELF 137

Query: 153 ISKDKEFIDVL 163
            ++  E  +++
Sbjct: 138 AAELAELKEII 148



>pdb|1G7Y|D Chain D, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1G7Y|C Chain C, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1G7Y|A Chain A, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1G7Y|F Chain F, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1G7Y|E Chain E, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1G7Y|B Chain B, The Crystal Structure Of The 58kd Vegetative Lectin From
           The Tropical Legume Dolichos Biflorus
 pdb|1LUL|B Chain B, Db58, A Legume Lectin From Dolichos Biflorus
 pdb|1LUL|C Chain C, Db58, A Legume Lectin From Dolichos Biflorus
 pdb|1LUL|E Chain E, Db58, A Legume Lectin From Dolichos Biflorus
 pdb|1LUL|A Chain A, Db58, A Legume Lectin From Dolichos Biflorus
 pdb|1LUL|D Chain D, Db58, A Legume Lectin From Dolichos Biflorus
 pdb|1LUL|F Chain F, Db58, A Legume Lectin From Dolichos Biflorus
          Length = 253

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 76  VGSITKINFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLHLEVMENNFKAI 135
           VGS  K N     G+LG++ +    N  +T+    +  +  ++   S H+ +  N+ K+I
Sbjct: 94  VGSEPKSN----SGFLGVFDSDVYDNSAQTVAVEFDTFSNTDWDPTSRHIGIDVNSIKSI 149



>pdb|1MBS|   Myoglobin (Met)
          Length = 153

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 28/104 (26%), Positives = 50/104 (47%), Gaps = 12/104 (11%)

Query: 21  GEKLLVLEFRNHPNTALWMYSTFISLKTHLQFIEDLKNSPNHRYFLFKEEGVYLGVGSIT 80
           G+++L+  F++HP T L  +  F     HL+  +D++ S + R        V   +G I 
Sbjct: 25  GQEVLIRLFKSHPET-LEKFDKF----KHLKSEDDMRRSEDLRK---HGNTVLTALGGIL 76

Query: 81  KINFFHKHGYLGIYKNPFLKNGGETILKALEFIAFEEFQLHSLH 124
           K    H+     + ++   K+  +  +K LEFI+  E  +H LH
Sbjct: 77  KKKGHHEAELKPLAQSHATKH--KIPIKYLEFIS--EAIIHVLH 116



>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
          Copper-Containing Amine Oxidase At 2.2a Resolution
 pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
          Copper-Containing Amine Oxidase At 2.2a Resolution
          Length = 642

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 21/82 (25%), Positives = 34/82 (40%), Gaps = 15/82 (18%)

Query: 9  NIQAIDFTNLNDGEKLLVLEFRNHPNTALWMYSTFISLKTHLQFIEDLKNSPNHRYFLFK 68
          N  A  +  L+D EK  VL +  HP        T +S+   + F+  + NS  H      
Sbjct: 29 NRLAFHYIGLDDPEKDHVLRYETHP--------TLVSIPRKI-FVVAIINSQTHEIL--- 76

Query: 69 EEGVYLGVGSITKINFFHKHGY 90
             + L + SI   N  + +G+
Sbjct: 77 ---INLRIRSIVSDNIHNGYGF 95



>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
 pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase Complexed With Enzyme Product, Unsaturated
           Disaccharide Hyaluronan
 pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
           Lyase At 2.1 Angstrom Resolution
          Length = 814

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 52  FIEDLKNSPNHRYFLFKEEGVYLG----VGSITKINFFHKHGYLGIYKNPFLK------N 101
           F+E  +   N  Y  FK   + +      G+   IN   K+    I  NPF+       N
Sbjct: 659 FLESKEPGRNIGYIFFKNSTIDIERKEQTGTWNSINRTSKN--TSIVSNPFITISQKHDN 716

Query: 102 GGET----ILKALEFIAFEEFQLHSLHLEVMENNFKAIAFYEKN 141
            G++    ++  ++  +F++   +S  +E++EN+ K    Y+KN
Sbjct: 717 KGDSYGYMMVPNIDRTSFDKLA-NSKEVELLENSSKQQVIYDKN 759



>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
           Thermophilic Photosynthetic Bacterium Chloroflexus
           Aurantiacus
          Length = 140

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 67  FKEEGVYLGVGSITKINFFHKHGYLGIYKNPFLKNGGETILKALEFIA 114
           F +  + L   ++ +++F +++  LG+  N  L NGG+ +  A+   A
Sbjct: 30  FAQTSLSLPANTVVRLDFVNQNN-LGVQHNWVLVNGGDDVAAAVNTAA 76



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,121,673
Number of Sequences: 13198
Number of extensions: 46631
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 8
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)