BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644956|ref|NP_207126.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(312 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NDH| Cytochrome B5 Reductase (E.C.1.6.2.2) 27 2.3
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex... 27 2.3
pdb|1E55|A Chain A, Crystal Structure Of The Inactive Mutan... 27 3.0
pdb|1E1E|B Chain B, Crystal Structure Of A Monocot (Maize Z... 27 3.0
pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarbox... 26 6.7
pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr) 26 6.7
>pdb|1NDH| Cytochrome B5 Reductase (E.C.1.6.2.2)
Length = 272
Score = 27.3 bits (59), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 31 LIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFI 70
L+YQG + KK I + +IAGG+G TP +
Sbjct: 120 LVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPML 159
>pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
Length = 274
Score = 27.3 bits (59), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 31 LIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFI 70
L+YQG + KK + + + +IAGG+G TP +
Sbjct: 122 LVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPML 161
>pdb|1E55|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Competitive Inhibitor Dhurrin
pdb|1E55|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Competitive Inhibitor Dhurrin
pdb|1E4L|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zm Glu191asp
pdb|1E4L|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zm Glu191asp
pdb|1E56|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Natural Substrate Dimboa-Beta-D-Glucoside
pdb|1E56|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Natural Substrate Dimboa-Beta-D-Glucoside
pdb|1E4N|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglu E191d In Complex With The
Natural Aglycone Dimboa
pdb|1E4N|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglu E191d In Complex With The
Natural Aglycone Dimboa
Length = 512
Score = 26.9 bits (58), Expect = 3.0
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 151 DGFRFNFNQFNLLLKPKVPPY---YPFCLPSGLYRESIKSYEEAHLVVTEDKDY 201
DG ++ N NLLL+ + PY + + +P L + +++H + ED Y
Sbjct: 117 DGIKYYRNLINLLLENGIEPYVTIFHWDVPQALEEKYGGFLDKSHKSIVEDYTY 170
>pdb|1E1E|B Chain B, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase
pdb|1E1E|A Chain A, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase
pdb|1E1F|A Chain A, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase In Complex With
P-Nitrophenyl-Beta-D-Thioglucoside
pdb|1E1F|B Chain B, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase In Complex With
P-Nitrophenyl-Beta-D-Thioglucoside
Length = 512
Score = 26.9 bits (58), Expect = 3.0
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 151 DGFRFNFNQFNLLLKPKVPPY---YPFCLPSGLYRESIKSYEEAHLVVTEDKDY 201
DG ++ N NLLL+ + PY + + +P L + +++H + ED Y
Sbjct: 117 DGIKYYRNLINLLLENGIEPYVTIFHWDVPQALEEKYGGFLDKSHKSIVEDYTY 170
>pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
pdb|1ORD|B Chain B, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
Length = 730
Score = 25.8 bits (55), Expect = 6.7
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 194 VVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKL--YFKDHAPFNLE-- 249
++T+ QR+ P K++L AN R + + +E+ ++L ++K++ F +
Sbjct: 555 LITQLLQLQRLIEEDAPLKQVLPSIYAANEERYNGYTIRELCQELHDFYKNNNTFTYQKR 614
Query: 250 LLEKEFYQNNATSLLVTSKDLVKLQDCNLPLS 281
L +EF+ ++ ++ + +PL+
Sbjct: 615 LFLREFFPEQGMLPYEARQEFIRNHNKLVPLN 646
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 25.8 bits (55), Expect = 6.7
Identities = 18/92 (19%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 194 VVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKL--YFKDHAPFNLE-- 249
++T+ QR+ P K++L AN R + + +E+ ++L ++K++ F +
Sbjct: 555 LITQLLQLQRLIEEDAPLKQVLPSIYAANEERYNGYTIRELCQELHDFYKNNNTFTYQKR 614
Query: 250 LLEKEFYQNNATSLLVTSKDLVKLQDCNLPLS 281
L +EF+ ++ ++ + +PL+
Sbjct: 615 LFLREFFPEQGMLPYEARQEFIRNHNKLVPLN 646
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,748,689
Number of Sequences: 13198
Number of extensions: 68056
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 6
length of query: 312
length of database: 2,899,336
effective HSP length: 88
effective length of query: 224
effective length of database: 1,737,912
effective search space: 389292288
effective search space used: 389292288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)