BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644958|ref|NP_207128.1| ketol-acid reductoisomerase
(ilvC) [Helicobacter pylori 26695]
(330 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Compl... 111 1e-25
pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Comp... 29 0.84
pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Fo... 29 0.84
pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human El... 27 3.2
pdb|1FEU|D Chain D, Crystal Structure Of Ribosomal Protein ... 27 4.2
pdb|5PAL| Parvalbumin (Alpha Lineage) 26 5.5
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol De... 26 7.1
pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate D... 26 7.1
pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyr... 26 7.1
>pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-Methylvalerate, Manganese And
Adp-Ribose.
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
Length = 524
Score = 111 bits (278), Expect = 1e-25
Identities = 81/257 (31%), Positives = 135/257 (52%), Gaps = 28/257 (10%)
Query: 20 QVGIIGYGAQGEAQALNLRDSKVKAR------IGLYQGSLSVSKAKKEGFE-----VLEV 68
Q+G+IG+G+Q AQA NL+DS +A+ IGL +GS S ++A+ GF + ++
Sbjct: 56 QIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDM 115
Query: 69 KELVQNSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVG 125
E + SD+++ L+ D + EK V +K I+G +HGF + Q + PK +
Sbjct: 116 WETISGSDLVLLLISDSAQADNYEK-VFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNIS 174
Query: 126 AILVAPKGPGSALREEYLKNR-----GLYHLIAIEQESSIHNAKAVALSYAKAMGGGRMG 180
I V PKG G ++R Y++ + G+ A+ Q+ A VAL ++ A+G
Sbjct: 175 VIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVD-GRATDVALGWSIALGSPF-- 231
Query: 181 VLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAY---FECVHEVKLV 237
T+ ++E +SD+FGE+ +L G + IV F ++G E+LAY EC+ V +
Sbjct: 232 TFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGV--I 289
Query: 238 ADLLHYKGVEGLRKHIS 254
+ + KG+ L +S
Sbjct: 290 SKTISTKGMLALYNSLS 306
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 28.9 bits (63), Expect = 0.84
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 8 DKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVK 43
DK I GV ++ V IIG G G A A++ RD+ K
Sbjct: 116 DKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAK 151
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 28.9 bits (63), Expect = 0.84
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 8 DKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVK 43
DK I GV ++ V IIG G G A A++ RD+ K
Sbjct: 116 DKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAK 151
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 26.9 bits (58), Expect = 3.2
Identities = 28/115 (24%), Positives = 46/115 (39%), Gaps = 15/115 (13%)
Query: 69 KELVQNSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAIL 128
K LV DV LLP+EL +L + K+ G S F + +LP+ +
Sbjct: 57 KVLVAQHDVYKGLLPEELTPLILATQ-----KQFNYTHICAGASA-FGKNLLPRVAAKLE 110
Query: 129 VAP-------KGPGSALREEYLKNRGLYHLIAIEQESSIHNAKAVALSYAKAMGG 176
VAP K P + +R Y N + +++ + + + + A GG
Sbjct: 111 VAPISDIIAIKSPDTFVRTIYAGN--ALCTVKCDEKVKVFSVRGTSFDAAATSGG 163
>pdb|1FEU|D Chain D, Crystal Structure Of Ribosomal Protein Tl5, One Of The Ctc
Family Proteins, Complexed With A Fragment Of 5s Rrna.
pdb|1FEU|A Chain A, Crystal Structure Of Ribosomal Protein Tl5, One Of The Ctc
Family Proteins, Complexed With A Fragment Of 5s Rrna
Length = 206
Score = 26.6 bits (57), Expect = 4.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 85 ELHKEVLEK---EVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPK 132
E+H+++L K IP E + G G S+H + + LP GV + V+P+
Sbjct: 119 EIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGV-ELAVSPE 168
>pdb|5PAL| Parvalbumin (Alpha Lineage)
Length = 109
Score = 26.2 bits (56), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 89 EVLEKEVIPFLKEGQIVGFAHGFSVH 114
E+L+K+ F++E ++ G GFS H
Sbjct: 48 EILDKDQSGFIEEEELKGVLKGFSAH 73
>pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
Length = 370
Score = 25.8 bits (55), Expect = 7.1
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 16/69 (23%)
Query: 163 AKAVALSYAKAMGGGRMGVLETSFKEECESDLF--GEQA-------VLCGGLEAIVR--- 210
A++V S K M GG + + E+CE LF G+ A V+ LEA+V
Sbjct: 181 ARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANT 240
Query: 211 ----MGFET 215
+GFE+
Sbjct: 241 LLSGLGFES 249
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 25.8 bits (55), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 18 SLQVGIIGYGAQGEAQALNLRDSKVKARI 46
S+ VG++G G G ALN+ + K +
Sbjct: 1 SMDVGVVGLGVMGANLALNIAEKGFKVAV 29
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 25.8 bits (55), Expect = 7.1
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Query: 12 DLGVIQSLQVGIIGYGAQGEAQALNLRDSKVKA-RIGLYQGSLSVSKAKKEGFEVLEVKE 70
+LG + V ++G G G+ A +L D V+A + +V A+ G E + E
Sbjct: 161 ELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDE 220
Query: 71 LVQN---SDVIMA 80
LV + SDV+++
Sbjct: 221 LVDHLARSDVVVS 233
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,859,566
Number of Sequences: 13198
Number of extensions: 77923
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 9
length of query: 330
length of database: 2,899,336
effective HSP length: 89
effective length of query: 241
effective length of database: 1,724,714
effective search space: 415656074
effective search space used: 415656074
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)