BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644959|ref|NP_207129.1| cell division inhibitor
(minD) [Helicobacter pylori 26695]
(268 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcu... 120 2e-28
pdb|1ION|A Chain A, The Septum Site-Determining Protein Min... 112 4e-26
pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator ... 99 4e-22
pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridi... 50 3e-07
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotoba... 44 1e-05
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structu... 44 1e-05
pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of Th... 44 1e-05
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 36 0.004
pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahyd... 29 0.49
pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-... 29 0.49
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 28 0.84
pdb|1VTK| Thymidine Kinase From Herpes Simplex Virus Type... 26 4.2
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 26 4.2
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-I Thymidine K... 26 4.2
pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase ... 26 4.2
pdb|1E2L|B Chain B, Kinetics And Crystal Structure Of The W... 26 4.2
pdb|1KI6|A Chain A, Crystal Structure Of Thymidine Kinase F... 26 4.2
pdb|1E2J|B Chain B, The Nucleoside Binding Site Of Herpes S... 26 4.2
pdb|1E2K|B Chain B, Kinetics And Crystal Structure Of The W... 26 4.2
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetyln... 26 5.4
pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga ... 26 5.4
pdb|1FR0|A Chain A, Solution Structure Of The Histidine-Con... 25 7.1
pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Nove... 25 7.1
pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment... 25 9.3
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 120 bits (300), Expect = 2e-28
Identities = 82/246 (33%), Positives = 138/246 (55%), Gaps = 16/246 (6%)
Query: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
M +++I SGKGG GK+T TANL++ L + G+KV+AVD D+ + NL ++LG+++ V +
Sbjct: 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDV-TL 59
Query: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDS 120
DV+ N+ A+ + A + D K+ +I +L+ FD+ILID
Sbjct: 60 HDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDC 119
Query: 121 PAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINR 180
PAG++ A+L + AL+V PE+S L D+ + VGI+ K+ A G ++++ +R
Sbjct: 120 PAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK-VGIVLKKAGLAILGFVLNRYGRSDR 178
Query: 181 -LKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCES--AKAYQ 237
+ PE + E+V+++ PL+ +IPED I T +G P ++ ES AKA+
Sbjct: 179 DIPPE--------AAEDVMEV---PLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFV 227
Query: 238 RITRRI 243
++ I
Sbjct: 228 KLAEEI 233
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg- Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 112 bits (280), Expect = 4e-26
Identities = 83/247 (33%), Positives = 132/247 (52%), Gaps = 17/247 (6%)
Query: 4 VVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDV 63
+++I SGKGG GK+T TANL++ L E G+KV+AVD D+ NL ++LG+++ + + DV
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDLTXANLSLVLGVDD-VNITLHDV 62
Query: 64 MEKNCNLSQALITDKKTKNLSFLAASQSKDKNI-LDKEKVAILINALRADFDYILIDSPA 122
+ + L A I + +N+ L + + I D K+ +I +L+ +D+ILID PA
Sbjct: 63 LAGDAKLEDA-IYXTQFENVYILPGAVDWEHVIKADPRKLPEVIKSLKGKYDFILIDCPA 121
Query: 123 GIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINRLK 182
G++ A L + A++V PE+S L D+ + VG + K+ A G I+NR
Sbjct: 122 GLQLRAXSAXLSGEEAILVTNPEISCLTDTXK-VGXVLKKAGLAILG------FILNRYG 174
Query: 183 PELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRR 242
+ I E + +PL+ +IPED I T +G P ++ ES A I
Sbjct: 175 ----RSERDIPPEAAQDVXDVPLLAVIPEDPVIREGTLEGIPAVKYKPESKGAQAFIK-- 228
Query: 243 ILGEEVE 249
L EEV+
Sbjct: 229 -LAEEVD 234
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 99.4 bits (246), Expect = 4e-22
Identities = 77/257 (29%), Positives = 125/257 (47%), Gaps = 19/257 (7%)
Query: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDV 60
M +T+ SGKGG GK+T TANL + LA+ G V VD DI + NL++ILG+E + +
Sbjct: 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEG-LPVTL 59
Query: 61 VDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDS 120
+V+ + +A+ + A + + EK+ ++ + D +L+D+
Sbjct: 60 QNVLAGEARIDEAIYVGPGGVKV-VPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDA 118
Query: 121 PAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINR 180
PAG+E AI A L+VV PE+SS+ D + K + G +V +++NR
Sbjct: 119 PAGLERSAVIAIAAAQELLLVVNPEISSITDG------LKTKIVAERLGTKV-LGVVVNR 171
Query: 181 LKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRIT 240
+ G ++ E+ IL +IG+IPED + A G+PV+ S A
Sbjct: 172 ----ITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAA----- 222
Query: 241 RRILGEEVEYVEFKAKR 257
R + E Y+ AK+
Sbjct: 223 -RAIVELANYIAGGAKK 238
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 50.1 bits (118), Expect = 3e-07
Identities = 65/251 (25%), Positives = 106/251 (41%), Gaps = 21/251 (8%)
Query: 10 GKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMIL-GLENRIVYDVV----DVM 64
GKGG+GKSTTT NL GL GK ++ V D + ++L GL + V D + + +
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDV 67
Query: 65 EKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGI 124
E + L + + ++ + I+ + + A D DY+ D +
Sbjct: 68 ELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDV 127
Query: 125 E-SGFEHAILH--ADMALVVVTPEVSSLRDSDRVVGIID--AKSNRAKKGMEVHKHLIIN 179
GF I A +V + E+ +L ++ + I AKS + G +I N
Sbjct: 128 VCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLG-----GIICN 182
Query: 180 RLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTD--CESAKAYQ 237
K VAN E ++ K L LI +P + A + VI D CE A+ Y+
Sbjct: 183 SRK---VAN-EYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAEEYR 238
Query: 238 RITRRILGEEV 248
+ R++ E+
Sbjct: 239 ELARKVDANEL 249
>pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1NIP|A Chain A, Nitrogenase Iron Protein
pdb|1NIP|B Chain B, Nitrogenase Iron Protein
Length = 289
Score = 44.3 bits (103), Expect = 1e-05
Identities = 21/31 (67%), Positives = 23/31 (73%)
Query: 10 GKGGVGKSTTTANLAIGLAESGKKVVAVDFD 40
GKGG+GKSTTT NL LAE GKKV+ V D
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
Length = 289
Score = 44.3 bits (103), Expect = 1e-05
Identities = 21/31 (67%), Positives = 23/31 (73%)
Query: 10 GKGGVGKSTTTANLAIGLAESGKKVVAVDFD 40
GKGG+GKSTTT NL LAE GKKV+ V D
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 40
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
Length = 289
Score = 44.3 bits (103), Expect = 1e-05
Identities = 21/31 (67%), Positives = 23/31 (73%)
Query: 10 GKGGVGKSTTTANLAIGLAESGKKVVAVDFD 40
GKGG+GKSTTT NL LAE GKKV+ V D
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 36.2 bits (82), Expect = 0.004
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 9 SGKGGVGKSTTTANLAIGLAESGKKVVAVDFD 40
+GKGGVGK++ + AI LAE GK+V+ V D
Sbjct: 14 TGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
Score = 31.2 bits (69), Expect = 0.13
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 10 GKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLD 47
GKGGVGK+T A +A+ LA+ G FD+ L D
Sbjct: 334 GKGGVGKTTMAAAIAVRLADMG-------FDVHLTTSD 364
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate
Synthetase From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate
Synthetase From Moorella Thermoacetica
Length = 557
Score = 29.3 bits (64), Expect = 0.49
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVV 35
+ +V IT G GK+TT+ L LA GK+V+
Sbjct: 59 LILVTAITPTPAGEGKTTTSVGLTDALARLGKRVM 93
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-
Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In N10-
Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In N10-
Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In N10-
Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
Length = 557
Score = 29.3 bits (64), Expect = 0.49
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVV 35
+ +V IT G GK+TT+ L LA GK+V+
Sbjct: 59 LILVTAITPTPAGEGKTTTSVGLTDALARLGKRVM 93
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.5 bits (62), Expect = 0.84
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 5 VTITSGKGGVGKSTTTANLAIGLAESGKKVVAV---DFDIGLRNLDMILGLENRIVYDVV 61
V + G GVGK+TT LA + GK V+ F + G N I
Sbjct: 95 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ 154
Query: 62 DVMEKNCNLSQALITDKKTKNLSFLAAS-----QSKDKNILDKEKVAILINALRADFDY- 115
+ ++ I K +N+ L A Q+K + + +K+ ++ L + +
Sbjct: 155 HTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE 214
Query: 116 --ILIDSPAGIESGFEHAILHADMALVVVT 143
+ ID+ G + + + H + L +T
Sbjct: 215 VMLTIDASTGQNAVSQAKLFHEAVGLTGIT 244
>pdb|1VTK| Thymidine Kinase From Herpes Simplex Virus Type 1 In Complex With
Adp And Deoxythymidine-Monophosphate
pdb|2VTK| Thymidine Kinase From Herpes Simplex Virus Type 1 In Complex With
Adp And Deoxythymidine
pdb|3VTK| Thymidine Kinase From Herpes Simplex Virus Type 1 In Complex With
Adp And 5-Iodo-Deoxyuridine-Monophosphate
Length = 343
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 171 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 217
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 222 GEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSAL 263
GEP+IR ++ KA + + VE+ +KRG SA+
Sbjct: 170 GEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAI 211
>pdb|1QHI|B Chain B, Herpes Simplex Virus Type-I Thymidine Kinase Complexed
With A Novel Non-Substrate Inhibitor,
9-(4-Hydroxybutyl)-N2- Phenylguanine
pdb|1QHI|A Chain A, Herpes Simplex Virus Type-I Thymidine Kinase Complexed
With A Novel Non-Substrate Inhibitor,
9-(4-Hydroxybutyl)-N2- Phenylguanine
Length = 366
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 194 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 240
>pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|1KIM|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|2KI5|A Chain A, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|1KIM|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
Length = 366
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 194 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 240
>pdb|1E2L|B Chain B, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With
(North)-Methanocarba-Thymidine
pdb|1E2L|A Chain A, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With
(North)-Methanocarba-Thymidine
Length = 331
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 159 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 205
>pdb|1KI6|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
Length = 331
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 159 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 205
>pdb|1E2J|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2J|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
Length = 331
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 159 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 205
>pdb|1E2K|B Chain B, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With
(North)-Methanocarba-Thymidine
pdb|1E2I|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2H|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1KI2|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1E2M|B Chain B, Hpt + Hmtt
pdb|1E2N|A Chain A, Hpt + Hmtt
pdb|1E2P|B Chain B, Thymidine Kinase, Dhbt
pdb|1E2N|B Chain B, Hpt + Hmtt
pdb|1KI7|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1KI3|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1E2K|A Chain A, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With
(North)-Methanocarba-Thymidine
pdb|1E2H|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1KI8|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1E2M|A Chain A, Hpt + Hmtt
pdb|1E2P|A Chain A, Thymidine Kinase, Dhbt
pdb|1KI3|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1KI2|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1KI8|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1KI6|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
pdb|1KI4|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
pdb|1KI7|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1E2I|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1KI4|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
Length = 331
Score = 26.2 bits (56), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 205 LIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVE 252
++G +PED HI + P R D A +R+ +L V Y++
Sbjct: 159 VLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRV-YGLLANTVRYLQ 205
>pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-Oxo-Sialic Acid
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 25.8 bits (55), Expect = 5.4
Identities = 34/149 (22%), Positives = 65/149 (42%), Gaps = 22/149 (14%)
Query: 54 NRIVYDVVDVMEKNCNLSQ--ALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRA 111
N IVY + + N + Q L + K + F A D +L++ K A + + A
Sbjct: 132 NMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAG----DFYLLERLKKAYPNHLIWA 187
Query: 112 DFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGME 171
FD +++ + + G + AI V ++ L K+ + K+ +E
Sbjct: 188 GFDEMMLPAAS---LGVDGAIGSTFNVNGVRARQIFEL-----------TKAGKLKEALE 233
Query: 172 VHKHLIINRLKPELVANGEMISIEEVLKI 200
+ + N L ++ANG ++I+E+LK+
Sbjct: 234 IQH--VTNDLIEGILANGLYLTIKELLKL 260
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 25.8 bits (55), Expect = 5.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 152 SDRVVGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMISIEE 196
S V+ ++ + RA K + K I RL+PE A G +IS+ +
Sbjct: 376 SAHVLSLVTEVATRALKAVRYQKFNIHRRLRPE--ATGGLISVNK 418
>pdb|1FR0|A Chain A, Solution Structure Of The Histidine-Containing
Phosphotransfer Domain Of Anaerobic Sensor Kinase Arcb
From Escherichia Coli.
pdb|2A0B| Histidine-Containing Phosphotransfer Domain Of Arcb From
Escherichia Coli
pdb|1A0B| Histidine-Containing Phosphotransfer Domain Of Arcb From
Escherichia Coli
pdb|1BDJ|B Chain B, Complex Structure Of Hpt Domain And Chey
Length = 125
Score = 25.4 bits (54), Expect = 7.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1 MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMI 49
+A+ + G V +S TA G+ E G K+ +GLR+L +
Sbjct: 33 LAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQL 81
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/31 (38%), Positives = 20/31 (63%), Gaps = 6/31 (19%)
Query: 7 ITSGKGGVGKSTTTANLAIGLAESGKKVVAV 37
+ GKGGVGKS+T ++ G++VV++
Sbjct: 43 LVXGKGGVGKSSTVNSII------GERVVSI 67
>pdb|1SIG| Crystal Structure Of A Sigma70 Subunit Fragment From Escherichia
Coli Rna Polymerase
Length = 339
Score = 25.0 bits (53), Expect = 9.3
Identities = 14/38 (36%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 146 VSSLRDSDRVVGIIDAKSNRAKKGM-EVHKHLIINRLK 182
+ ++D +R + I +AK+ RAKK M E + L+I+ K
Sbjct: 246 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK 283
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,387,109
Number of Sequences: 13198
Number of extensions: 54731
Number of successful extensions: 173
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 26
length of query: 268
length of database: 2,899,336
effective HSP length: 87
effective length of query: 181
effective length of database: 1,751,110
effective search space: 316950910
effective search space used: 316950910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)