BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644960|ref|NP_207130.1| cell division topological
specificity factor (minE) [Helicobacter pylori 26695]
(77 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1K6W|A Chain A, The Structure Of Escherichia Coli Cytos... 26 0.91
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 25 2.0
pdb|1EV0|A Chain A, Solution Structure Of The Mine Topologi... 25 2.0
pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From... 24 3.4
pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From... 24 3.4
pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From... 24 3.4
pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From... 24 3.4
pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From... 24 3.4
pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Ca... 24 3.4
pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Ca... 24 3.4
pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee... 23 5.9
pdb|1BG6| Crystal Structure Of The N-(1-D-Carboxylethyl)-... 23 7.7
>pdb|1K6W|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase
pdb|1K70|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase Bound
To 4-Hydroxy-3,4-Dihydro-1h-Pyrimidin-2-One
Length = 426
Score = 25.8 bits (55), Expect = 0.91
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Query: 34 YMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQS--VETI 69
Y E + A+ QKY + D+H +D QS VET+
Sbjct: 192 YGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETV 229
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 24.6 bits (52), Expect = 2.0
Identities = 9/40 (22%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Query: 33 PYMEEMRKEIIAVIQKYTKSSDIHFKTL--DSNQSVETIE 70
P EE R+E++ ++ K T+ + + + + ++ + +E +E
Sbjct: 106 PLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE 145
>pdb|1EV0|A Chain A, Solution Structure Of The Mine Topological Specificity
Domain
pdb|1EV0|B Chain B, Solution Structure Of The Mine Topological Specificity
Domain
Length = 58
Score = 24.6 bits (52), Expect = 2.0
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 4/46 (8%)
Query: 34 YMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQ---SVETIEVEIILP 76
Y+ ++RK+I+ VI KY + D T+ Q + +E+ + LP
Sbjct: 8 YLPQLRKDILEVICKYVQ-IDPEMVTVQLEQKDGDISILELNVTLP 52
>pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GGF|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1IPH|A Chain A, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|B Chain B, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|C Chain C, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|D Chain D, Structure Of Catalase Hpii From Escherichia Coli
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|B Chain B, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|C Chain C, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|D Chain D, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|B Chain B, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|C Chain C, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
Length = 753
Score = 23.9 bits (50), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (44%)
Query: 26 KERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
K R + + +E+R + I K K+ +H K L S T + +LP
Sbjct: 599 KGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLP 649
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
Length = 374
Score = 23.1 bits (48), Expect = 5.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 10 KGSAATATDRLKLILAKERTLNLPYMEEMRKEIIA 44
K AA A + K ++ +E +++P+ E+R +IIA
Sbjct: 8 KCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIA 42
>pdb|1BG6| Crystal Structure Of The N-(1-D-Carboxylethyl)-L-Norvaline
Dehydrogenase From Arthrobacter Sp. Strain 1c
Length = 359
Score = 22.7 bits (47), Expect = 7.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 11 GSAATATDRLKLILAKERTLNLPYMEEMRKE 41
GS A D ++ +AK LN+P + E KE
Sbjct: 231 GSLAEKVDAERIAIAKAFDLNVPSVCEWYKE 261
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.133 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,875
Number of Sequences: 13198
Number of extensions: 8891
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 12
length of query: 77
length of database: 2,899,336
effective HSP length: 53
effective length of query: 24
effective length of database: 2,199,842
effective search space: 52796208
effective search space used: 52796208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)