BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644963|ref|NP_207133.1| hypothetical protein
[Helicobacter pylori 26695]
(62 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 26 0.99
pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain O... 25 1.7
pdb|2FHE|A Chain A, Fasciola Hepatica Glutathione S-Transfe... 24 3.8
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) F... 23 6.4
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) F... 23 6.4
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 25.8 bits (55), Expect = 0.99
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 34 KYIEKACELNDGRG 47
+Y+ KACELN G G
Sbjct: 46 QYLSKACELNSGNG 59
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain Of Hop In Complex
With The Hsp90-Peptide Meevd
Length = 131
Score = 25.0 bits (53), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 14 LKSMRLGNVSGKVEDFIRGRKYIEKACELN 43
LK LGN + K +DF K+ +KA EL+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD 34
>pdb|2FHE|A Chain A, Fasciola Hepatica Glutathione S-Transferase Isoform 1 In
Complex With Glutathione
pdb|2FHE|B Chain B, Fasciola Hepatica Glutathione S-Transferase Isoform 1 In
Complex With Glutathione
Length = 216
Score = 23.9 bits (50), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 32 GRKYIEKACELNDGRGWNGKK 52
G KY E+ E +DG W KK
Sbjct: 24 GEKYEEQIYERDDGEKWFSKK 44
>pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And
5-Fluorouracil
Length = 1025
Score = 23.1 bits (48), Expect = 6.4
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 26 VEDFIRGRKYIEKACELNDGRGWNGKKRLEESH 58
++D+ G K + + + +GW+G+ ESH
Sbjct: 827 IQDYCTGLKALLYLKSIEELQGWDGQSPGTESH 859
>pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
Length = 1025
Score = 23.1 bits (48), Expect = 6.4
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 26 VEDFIRGRKYIEKACELNDGRGWNGKKRLEESH 58
++D+ G K + + + +GW+G+ ESH
Sbjct: 827 IQDYCTGLKALLYLKSIEELQGWDGQSPGTESH 859
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,091
Number of Sequences: 13198
Number of extensions: 13936
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 62
length of database: 2,899,336
effective HSP length: 38
effective length of query: 24
effective length of database: 2,397,812
effective search space: 57547488
effective search space used: 57547488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)