BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644964|ref|NP_207134.1| hypothetical protein
[Helicobacter pylori 26695]
(138 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Prote... 287 3e-79
pdb|1QO3|A Chain A, Complex Between Nk Cell Receptor Ly49a ... 27 1.1
pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of... 27 1.1
pdb|1DDH|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed... 27 1.1
pdb|1BII|A Chain A, The Crystal Structure Of H-2dd Mhc Clas... 27 1.1
pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina... 25 2.5
pdb|1B35|C Chain C, Cricket Paralysis Virus (Crpv) 25 4.2
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydroge... 25 4.2
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 24 5.5
pdb|2MHA|A Chain A, Class I Histocompatibility Antigen H-2k... 24 5.5
pdb|1KJ2|I Chain I, Murine Alloreactive Scfv Tcr-Peptide-Mh... 24 5.5
pdb|1LEG|A Chain A, Crystal Structure Of H-2kb Bound To The... 24 5.5
pdb|1G7P|A Chain A, Crystal Structure Of Mhc Class I H-2kb ... 24 5.5
pdb|1FZM|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heav... 24 5.5
pdb|1KJ3|H Chain H, Mhc Class I H-2kb Molecule Complexed Wi... 24 5.5
pdb|1FO0|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mh... 24 5.5
pdb|1FZK|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heav... 24 5.5
pdb|1MYR| Myrosinase From Sinapis Alba 24 7.2
pdb|1I1R|B Chain B, Crystal Structure Of A CytokineRECEPTOR... 23 9.3
pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Do... 23 9.3
>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
Length = 138
Score = 287 bits (735), Expect = 3e-79
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC
Sbjct: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF
Sbjct: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
Query: 121 EKACRLGSEDACGILNNY 138
EKACRLGSEDACGILNNY
Sbjct: 121 EKACRLGSEDACGILNNY 138
>pdb|1QO3|A Chain A, Complex Between Nk Cell Receptor Ly49a And Its Mhc Class I
Ligand H-2dd
Length = 277
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLN-----------DQDGCLILGYKQYAGKG 108
N + + DLR A +YY+++ G + + DG L+ GY Q+A G
Sbjct: 70 NEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 120
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 26.6 bits (57), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 2/38 (5%)
Query: 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGK--GVVKN 112
L ++ YY +C N G L++GY GK +VKN
Sbjct: 147 LYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKN 184
>pdb|1DDH|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And An Immunodominant Peptide P18-I10 From
The Human Immunodeficiency Virus Envelope Glycoprotein
120
Length = 274
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLN-----------DQDGCLILGYKQYAGKG 108
N + + DLR A +YY+++ G + + DG L+ GY Q+A G
Sbjct: 70 NEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 120
>pdb|1BII|A Chain A, The Crystal Structure Of H-2dd Mhc Class I In Complex With
The Hiv-1 Derived Peptide P18-110
Length = 365
Score = 26.6 bits (57), Expect = 1.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLN-----------DQDGCLILGYKQYAGKG 108
N + + DLR A +YY+++ G + + DG L+ GY Q+A G
Sbjct: 94 NEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 144
>pdb|1L2Q|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
pdb|1L2R|A Chain A, Crystal Structure Of The Methanosarcina Barkeri
Monomethylamine Methyltransferase (Mtmb)
Length = 458
Score = 25.4 bits (54), Expect = 2.5
Identities = 20/82 (24%), Positives = 32/82 (38%), Gaps = 6/82 (7%)
Query: 28 FGCLSLVSNSQINKQ------KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81
F C +++ ++ L + KA EL G F G+F K + + L KA
Sbjct: 7 FDCYDFYDRAKVGEKCTQDDWDLMKIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFKAG 66
Query: 82 QYYSKACGLNDQDGCLILGYKQ 103
CG+ D I+ Y +
Sbjct: 67 FEMLLECGIYCTDTHRIVKYTE 88
>pdb|1B35|C Chain C, Cricket Paralysis Virus (Crpv)
Length = 282
Score = 24.6 bits (52), Expect = 4.2
Identities = 13/43 (30%), Positives = 19/43 (43%), Gaps = 5/43 (11%)
Query: 27 MFGCLS-----LVSNSQINKQKLFQYLSKACELNSGNGCRFLG 64
M+ C+S V N + Q +F + CE+N G F G
Sbjct: 206 MYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVNGGPDLEFAG 248
>pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
pdb|1GJV|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Atp-Gamma-S
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Length = 388
Score = 24.6 bits (52), Expect = 4.2
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 3 GGGTVKKDLKKAIQYYVKACE-------LNEMFGCLSLVSNSQ 38
GGG KDL + + Y+ E ++ +FG L + S Q
Sbjct: 287 GGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQ 329
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 8 KKDLKKAIQYYVKACELNEMFGC-LSLVSNSQINKQKLFQYLSK 50
+KD+KKA++YY NE+ G S S + + + K+ Y SK
Sbjct: 13 EKDMKKAVEYY-----KNEIAGLRTSRASTALVEEIKVEYYGSK 51
>pdb|2MHA|A Chain A, Class I Histocompatibility Antigen H-2k(B) Complex With
Octapeptide Arg-Gly-Tyr-Val-Tyr-Gln-Gly-Leu
pdb|2MHA|C Chain C, Class I Histocompatibility Antigen H-2k(B) Complex With
Octapeptide Arg-Gly-Tyr-Val-Tyr-Gln-Gly-Leu
Length = 270
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1KJ2|I Chain I, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
pdb|1KJ2|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
Length = 277
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1LEG|A Chain A, Crystal Structure Of H-2kb Bound To The Dev8 Peptide
Length = 274
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1G7P|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Yeast Alpha-
Glucosidase
pdb|1G7Q|A Chain A, Crystal Structure Of Mhc Class I H-2kb Heavy Chain
Complexed With Beta-2 Microglobulin And Muc1 Vntr
Peptide Sapdtrpa
pdb|1OSZ|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And An (L4v) Mutant Of The Vesicular
Stomatitis Virus Nucleoprotein
pdb|1KBG|H Chain H, Mhc Class I H-2kb Presented Glycopeptide Rgy8-6h-Gal2
pdb|2VAA|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1VAC|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Chicken Ovalbumin
pdb|1VAD|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Yeast Alpha-Glucosidase
pdb|2VAB|A Chain A, Mhc Class I H-2kb Heavy Chain Complexed With Beta-2
Microglobulin And Sendai Virus Nucleoprotein
pdb|1BQH|A Chain A, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1BQH|D Chain D, Murine Cd8aa Ectodomain Fragment In Complex With H-2kbVSV8
pdb|1G6R|H Chain H, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|I Chain I, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|2CKB|H Chain H, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|I Chain I, Structure Of The 2cKBDEV8 COMPLEX
Length = 274
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1FZM|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
pdb|1FZO|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
Length = 274
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1KJ3|H Chain H, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|1KJ3|I Chain I, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
Length = 279
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 71 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 121
>pdb|1FO0|H Chain H, Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule
Complex
Length = 276
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 71 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 121
>pdb|1FZK|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Sendai Virus Nucleoprotein
pdb|1FZJ|A Chain A, Mhc Class I Natural Mutant H-2kbm1 Heavy Chain Complexed
With Beta-2 Microglobulin And Vesicular Stomatitis Virus
Nucleoprotein
Length = 274
Score = 24.3 bits (51), Expect = 5.5
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 11/51 (21%)
Query: 69 NGKYVKKDLRKAAQYYSKACGLND-----------QDGCLILGYKQYAGKG 108
N + + DLR YY+++ G + DG L+ GY+QYA G
Sbjct: 70 NEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 120
>pdb|1MYR| Myrosinase From Sinapis Alba
Length = 501
Score = 23.9 bits (50), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (49%)
Query: 53 ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86
E N+G RF + +DL+K+ Q+Y K
Sbjct: 464 EFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQK 497
>pdb|1I1R|B Chain B, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 181
Score = 23.5 bits (49), Expect = 9.3
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 77 LRKAAQYYSKACGLNDQDGCLILGYKQ 103
L AA ++ K +ND D C ++G+ +
Sbjct: 41 LEPAAIFHLKLPAINDTDHCGLIGFNE 67
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 23.5 bits (49), Expect = 9.3
Identities = 15/41 (36%), Positives = 17/41 (40%)
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCL 97
G G + F GKYV K L + GL D DG L
Sbjct: 112 GLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNL 152
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 846,580
Number of Sequences: 13198
Number of extensions: 32385
Number of successful extensions: 169
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 21
length of query: 138
length of database: 2,899,336
effective HSP length: 79
effective length of query: 59
effective length of database: 1,856,694
effective search space: 109544946
effective search space used: 109544946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)