BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644965|ref|NP_207135.1| hypothetical protein
[Helicobacter pylori 26695]
(101 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin... 30 0.041
pdb|1HT9|A Chain A, Domain Swapping Ef-Hands >gi|14277911|p... 30 0.041
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 30 0.054
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 29 0.070
pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-65... 28 0.16
pdb|1H6G|A Chain A, Alpha-Catenin M-Domain >gi|15825840|pdb... 28 0.16
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 0.27
pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome... 27 0.46
pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Cor... 27 0.46
pdb|1BG7| Localized Unfolding At The Junction Of Three Fe... 26 0.59
pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain 26 0.59
pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritim... 25 1.0
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 25 1.7
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 25 1.7
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 25 1.7
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 25 1.7
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 25 1.7
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 25 1.7
pdb|2VSG|A Chain A, A Structural Motif In The Variant Surfa... 24 2.3
pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm Do... 24 2.3
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 24 2.3
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 24 2.3
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 24 2.3
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 24 3.0
pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook >gi|23200318|... 24 3.0
pdb|1H6Z|A Chain A, 3.0 A Resolution Crystal Structure Of G... 24 3.0
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 24 3.0
pdb|1ISI|A Chain A, Crystal Structure Analysis Of Bst-1CD15... 24 3.0
pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recy... 23 3.9
pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk... 23 3.9
pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacte... 23 5.0
pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 23 5.0
pdb|1L6L|A Chain A, Structures Of Apolipoprotein A-Ii And A... 23 5.0
pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Me... 23 5.0
pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragm... 23 6.6
pdb|1IXR|A Chain A, Ruva-Ruvb Complex >gi|24987360|pdb|1IXR... 23 6.6
pdb|1I3G|H Chain H, Crystal Structure Of An Ampicillin Sing... 22 8.6
pdb|1A5J| Chicken B-Myb Dna Binding Domain, Repeat 2 And ... 22 8.6
pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Amp... 22 8.6
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexe... 22 8.6
pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Amp... 22 8.6
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 30.0 bits (66), Expect = 0.041
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 40 KIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQT--KHFKEVWEKGDN 97
K E+ I EK KEG + ++EELK++ + E LL+ + T + F+E+ + GD
Sbjct: 1 KSPEELKGIFEKYAAKEGDP-NQLSKEELKLLLQTEGPSLLKGMSTLDELFEELDKNGDG 59
Query: 98 E 98
E
Sbjct: 60 E 60
>pdb|1HT9|A Chain A, Domain Swapping Ef-Hands
pdb|1HT9|B Chain B, Domain Swapping Ef-Hands
Length = 76
Score = 30.0 bits (66), Expect = 0.041
Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 3/61 (4%)
Query: 40 KIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQT--KHFKEVWEKGDN 97
K E+ I EK KEG ++ ++EELK++ + E LL+ + T + F+E+ + GD
Sbjct: 2 KSPEELKGIFEKYAAKEGDP-NNLSKEELKLLLQTEFPSLLKGMSTLDELFEELDKNGDG 60
Query: 98 E 98
E
Sbjct: 61 E 61
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 29.6 bits (65), Expect = 0.054
Identities = 19/69 (27%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 34 FKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEA----EEKRLLEQIQTKHFK 89
F+EE + +E+ ++K +E K +D +E +K++ EEK +++IQ K K
Sbjct: 95 FEEELDRAQERLATALQKL--EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK 152
Query: 90 EVWEKGDNE 98
+ E D +
Sbjct: 153 HIAEDADRK 161
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 29.3 bits (64), Expect = 0.070
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 51 KRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQ 84
K + +EG KL +FNE EL E+K LLE +Q
Sbjct: 5 KNVLEEGSKLEEFNELEL----SPEDKELLEYLQ 34
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 28.1 bits (61), Expect = 0.16
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 20 KNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELK---------- 69
KN +E K F+E + K+ E A +EG+KL + +L+
Sbjct: 27 KNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRXSASQLEALCPQVINAA 86
Query: 70 IMFEAEEKRLLEQIQTKHFKEVWEK 94
+ A+ + L Q FKE WEK
Sbjct: 87 LALAAKPQSKLAQENXDLFKEQWEK 111
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 28.1 bits (61), Expect = 0.16
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 20 KNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELK---------- 69
KN +E K F+E + K+ E A +EG+KL + +L+
Sbjct: 33 KNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRXSASQLEALCPQVINAA 92
Query: 70 IMFEAEEKRLLEQIQTKHFKEVWEK 94
+ A+ + L Q FKE WEK
Sbjct: 93 LALAAKPQSKLAQENXDLFKEQWEK 117
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 27.3 bits (59), Expect = 0.27
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 35 KEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEA----EEKRLLEQIQTKHFKE 90
+EE + +E+ ++K +E K +D +E +K++ EEK +++IQ K K
Sbjct: 96 EEELDRAQERLATALQKL--EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 153
Query: 91 VWEKGDNE 98
+ E D +
Sbjct: 154 IAEDADRK 161
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
Length = 243
Score = 26.6 bits (57), Expect = 0.46
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 7 VRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEK 51
+ +D+ KN EV TK FF ++ I E+ V I E+
Sbjct: 198 ITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQ 242
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 252
Score = 26.6 bits (57), Expect = 0.46
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 7 VRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEK 51
+ +D+ KN EV TK FF ++ I E+ V I E+
Sbjct: 207 ITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQ 251
>pdb|1BG7| Localized Unfolding At The Junction Of Three Ferritin Subunits.
A Mechanism For Iron Release?
Length = 176
Score = 26.2 bits (56), Expect = 0.59
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 33 FFKEESQKIREQAVKIVEKRLKKEG-MKLSDFNEEE 67
FFKE+S + RE A K+++ + K+ G + L D + E
Sbjct: 51 FFKEQSHEEREHAEKLMKDQNKRGGRIVLQDVQKPE 86
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 26.2 bits (56), Expect = 0.59
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 7 VRDFLDSCKQTIQKNSSEVFQKTKRAFFK--EESQKIREQAVKIVEKRL--KKEGMKLSD 62
V D +++ + I+ N ++ +R F + E +I ++ + +R+ K+E +K
Sbjct: 512 VDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRRVLAKREDIKSDG 571
Query: 63 FNEEELKIMFEAEEKRLLEQIQTKHFKEVWEK 94
F+ E KIM + ++ ++ K F +W K
Sbjct: 572 FSIETCKIMVDMLDEDGSGKLGLKEFYILWTK 603
>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Recycling Factor, Rrf
Length = 185
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 8/70 (11%)
Query: 20 KNSSEVFQKTK---RAFFKEESQKIREQAVKIV-----EKRLKKEGMKLSDFNEEELKIM 71
K + E+ ++ K R +E +KI+E + + KRL+ E KL+D E+L +
Sbjct: 115 KKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEV 174
Query: 72 FEAEEKRLLE 81
FE +++ ++E
Sbjct: 175 FEIKKEEIME 184
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 11 LDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
L C T + + ++ KEE KI+E+ EK LK+ G + D ++E +
Sbjct: 96 LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN----EKLLKEYGFCIMDNHKERI 149
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 11 LDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
L C T + + ++ KEE KI+E+ EK LK+ G + D ++E +
Sbjct: 95 LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN----EKLLKEYGFCIMDNHKERI 148
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 11 LDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
L C T + + ++ KEE KI+E+ EK LK+ G + D ++E +
Sbjct: 124 LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN----EKLLKEYGFCIMDNHKERI 177
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 11 LDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
L C T + + ++ KEE KI+E+ EK LK+ G + D ++E +
Sbjct: 123 LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN----EKLLKEYGFCIMDNHKERI 176
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 24.6 bits (52), Expect = 1.7
Identities = 21/97 (21%), Positives = 44/97 (44%), Gaps = 18/97 (18%)
Query: 6 QVRDFLDSCKQTIQKNSSEV------FQKTKRAFFK----------EESQKIREQAVKIV 49
+ ++ L+ +Q ++K + E+ +K AF +ESQK+ ++ +
Sbjct: 71 KAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNM 130
Query: 50 EKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTK 86
E+ KK K+ ++ +K E ++K L + TK
Sbjct: 131 EETNKKLAPKIKQAYDDFVKHAEEVQKK--LHEAATK 165
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 24.6 bits (52), Expect = 1.7
Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)
Query: 11 LDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
L C T + + ++ KEE KI+E+ EK LK+ G + D ++E +
Sbjct: 123 LSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN----EKLLKEYGFCIMDNHKERI 176
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 24.3 bits (51), Expect = 2.3
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 1 MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRA-------FFKEESQ------KIREQAVK 47
MK++ Q LDS K + ++ + K F K ES K++E+ VK
Sbjct: 267 MKLLAQKTAALDSIKFQLAASTGKKTSDYKEDENLKTEYFGKTESNIEALWNKVKEEKVK 326
Query: 48 IVEKRLKKEGMKLSDFNEEE 67
+ + K+SD N EE
Sbjct: 327 GADPEDPSKESKISDLNTEE 346
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
Complex
Length = 294
Score = 24.3 bits (51), Expect = 2.3
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 22 SSEVFQK-TKRAFFKEESQKIR--------EQAVKIVEKRLKKEGMKLSDFNEEELKIMF 72
S E+ Q T+R FF + + I E AV + ++ K DFN+E K +
Sbjct: 87 SEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQS---KYGDFNKEVHKSGY 143
Query: 73 EAEEKRLLEQIQTKH--FKEVWEK 94
A +K L +++ +H K+ WE+
Sbjct: 144 LAGDKLLPQRVLEQHKLNKDQWEE 167
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 24.3 bits (51), Expect = 2.3
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 22 SSEVFQK-TKRAFFKEESQKIR--------EQAVKIVEKRLKKEGMKLSDFNEEELKIMF 72
S E+ Q T+R FF + + I E AV + ++ K DFN+E K +
Sbjct: 90 SEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQS---KYGDFNKEVHKSGY 146
Query: 73 EAEEKRLLEQIQTKH--FKEVWEK 94
A +K L +++ +H K+ WE+
Sbjct: 147 LAGDKLLPQRVLEQHKLNKDQWEE 170
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 24.3 bits (51), Expect = 2.3
Identities = 19/68 (27%), Positives = 31/68 (44%), Gaps = 3/68 (4%)
Query: 35 KEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKR---LLEQIQTKHFKEV 91
KE +Q Q + E + K +KL E+ELK + KR LL++ + V
Sbjct: 8 KEVTQLPEPQTASLAELQQXKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPV 67
Query: 92 WEKGDNEQ 99
+ +G + Q
Sbjct: 68 YPRGLDSQ 75
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 24.3 bits (51), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 36 EESQKIREQAVKIVEKRLKKEGMKLSD--FNEEELKIMFEAEEKRLLEQIQ 84
EE ++ +E+ +K + ++ KL+ F E+ K + EAEE RL E ++
Sbjct: 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 23.9 bits (50), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 51 KRLKKEGMKLSDFNEEELKI 70
K++KK G+K+ +EEEL I
Sbjct: 184 KKVKKNGVKVRFLSEEELPI 203
>pdb|1L8D|A Chain A, Rad50 Coiled-Coil Zn Hook
pdb|1L8D|B Chain B, Rad50 Coiled-Coil Zn Hook
Length = 112
Score = 23.9 bits (50), Expect = 3.0
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 4 MHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDF 63
M ++ + L++ K TI++ +E+ Q+ K K + +K + + G +L+D
Sbjct: 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDE 60
Query: 64 NEEEL 68
+ EEL
Sbjct: 61 HREEL 65
>pdb|1H6Z|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 KEESQKIREQAVKIVEKRLKKEGMKL 60
KEE IRE+ VK E + K G ++
Sbjct: 736 KEELSLIREEVVKTAEAVITKSGKRV 761
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 23.9 bits (50), Expect = 3.0
Identities = 22/82 (26%), Positives = 35/82 (41%), Gaps = 10/82 (12%)
Query: 17 TIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEE 76
T +K ++T+ AFF + I E + R+K+EG ELK+ F
Sbjct: 53 TEEKEKXYPLEETEDAFFDTVNDWILEISKGWAPWRIKREG--------NELKVTFRKIR 104
Query: 77 KRLLEQIQ--TKHFKEVWEKGD 96
K+ +I+ T H + GD
Sbjct: 105 KKEGTEIKALTYHLLKFERDGD 126
>pdb|1ISI|A Chain A, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Ethenonad
pdb|1ISI|B Chain B, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Ethenonad
pdb|1ISJ|A Chain A, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
NMN
pdb|1ISJ|B Chain B, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
NMN
pdb|1ISH|A Chain A, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Ethenonadp
pdb|1ISH|B Chain B, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Ethenonadp
pdb|1ISF|A Chain A, Crystal Structure Analysis Of Bst-1CD157
pdb|1ISF|B Chain B, Crystal Structure Analysis Of Bst-1CD157
pdb|1ISG|A Chain A, Crystal Structure Analysis Of Bst-1CD157 WITH ATPGAMMAS
pdb|1ISG|B Chain B, Crystal Structure Analysis Of Bst-1CD157 WITH ATPGAMMAS
pdb|1ISM|A Chain A, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Nicotinamide
pdb|1ISM|B Chain B, Crystal Structure Analysis Of Bst-1CD157 COMPLEXED WITH
Nicotinamide
Length = 265
Score = 23.9 bits (50), Expect = 3.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 43 EQAVKIVEKRLKKEGMKLSDFNE 65
E ++K++EKRLK G + S N+
Sbjct: 208 EGSMKVLEKRLKDMGFQYSCIND 230
>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor
Length = 184
Score = 23.5 bits (49), Expect = 3.9
Identities = 17/80 (21%), Positives = 40/80 (49%), Gaps = 13/80 (16%)
Query: 1 MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL 60
++++H++ + + +++ + E+ EE + I E K +RL+K L
Sbjct: 116 VRLLHKITEEARVRVRNVRREAKEMI---------EELEGISEDEKKRALERLQK----L 162
Query: 61 SDFNEEELKIMFEAEEKRLL 80
+D +E+ + EA+EK ++
Sbjct: 163 TDKYIDEINKLMEAKEKEIM 182
Score = 23.5 bits (49), Expect = 3.9
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 40 KIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQ 84
KI E+A ++ + +++E ++ EEL+ + E E+KR LE++Q
Sbjct: 121 KITEEA-RVRVRNVRREAKEMI----EELEGISEDEKKRALERLQ 160
>pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2- Oxalate
pdb|1PYM|B Chain B, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2- Oxalate
Length = 295
Score = 23.5 bits (49), Expect = 3.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 52 RLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKG 95
++KK N ++L+ + EA +Q FK +W G
Sbjct: 4 KVKKTTQLKQXLNSKDLEFIXEAHNGLSARIVQEAGFKGIWGSG 47
>pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
pdb|1BUC|B Chain B, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
Length = 383
Score = 23.1 bits (48), Expect = 5.0
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 60 LSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEK 94
L+D ++ LK+ + EK+L + + K +++K
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDK 39
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase
Complexed With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase
Complexed With Sulfopyruvate
Length = 295
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 52 RLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKG 95
++KK N ++L+ + EA +Q FK +W G
Sbjct: 4 KVKKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSG 47
>pdb|1L6L|A Chain A, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|B Chain B, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|C Chain C, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|D Chain D, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|E Chain E, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|F Chain F, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|G Chain G, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|H Chain H, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|I Chain I, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|J Chain J, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|K Chain K, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|L Chain L, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|M Chain M, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|N Chain N, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|P Chain P, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|Q Chain Q, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|S Chain S, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|T Chain T, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|U Chain U, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|V Chain V, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|W Chain W, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|X Chain X, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|Y Chain Y, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|Z Chain Z, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|1 Chain 1, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|2 Chain 2, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|3 Chain 3, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|4 Chain 4, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|5 Chain 5, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|6 Chain 6, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|7 Chain 7, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
pdb|1L6L|8 Chain 8, Structures Of Apolipoprotein A-Ii And A Lipid Surrogate
Complex Provide Insights Into Apolipoprotein-Lipid
Interactions
Length = 77
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/48 (22%), Positives = 25/48 (51%)
Query: 16 QTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDF 63
QT+ ++ +K K + E++ E++ + + +KK G +L +F
Sbjct: 16 QTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNF 63
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 23.1 bits (48), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 15 KQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEEL 68
K+ I N SE+ + A + + V ++K + E +KL+ + E+L
Sbjct: 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDL 231
>pdb|1LVA|A Chain A, Crystal Structure Of A C-Terminal Fragment Of Moorella
Thermoacetica Elongation Factor Selb
Length = 258
Score = 22.7 bits (47), Expect = 6.6
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 63 FNEEELKIMFEAEEKRLLEQIQTKHFKEV 91
F+E + K++ + E+K + + Q FKEV
Sbjct: 135 FSETQKKLLKDLEDKYRVSRWQPPSFKEV 163
>pdb|1IXR|A Chain A, Ruva-Ruvb Complex
pdb|1IXR|B Chain B, Ruva-Ruvb Complex
Length = 191
Score = 22.7 bits (47), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 53 LKKEGMKLSDFNEEELKIMFE 73
LK+EG+ L F +EE +FE
Sbjct: 52 LKEEGLSLYGFPDEENLALFE 72
>pdb|1I3G|H Chain H, Crystal Structure Of An Ampicillin Single Chain Fv, Form
1, Free
Length = 121
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 38 SQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMF 72
+QK +++A V+K M+LS E+ + F
Sbjct: 61 NQKFKDKATLTVDKSSSTAYMQLSSLTSEDSAVYF 95
>pdb|1A5J| Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32
Structures
Length = 110
Score = 22.3 bits (46), Expect = 8.6
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 22/69 (31%)
Query: 30 KRAFFKEESQKIREQAVK-------IVEKRLK---------------KEGMKLSDFNEEE 67
K + KEE QK+ E K ++ K LK +K S + EEE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 66
Query: 68 LKIMFEAEE 76
+I+FEA +
Sbjct: 67 DRIIFEAHK 75
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 38 SQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMF 72
+QK +++A V+K M+LS E+ + F
Sbjct: 192 NQKFKDKATLTVDKSSSTAYMQLSSLTSEDSAVYF 226
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 22.3 bits (46), Expect = 8.6
Identities = 8/18 (44%), Positives = 15/18 (82%)
Query: 43 EQAVKIVEKRLKKEGMKL 60
+Q I++KRLKK+G+++
Sbjct: 211 KQMAAIIKKRLKKKGVEV 228
>pdb|1H8S|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|B Chain B, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment.
pdb|1H8S|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment Complexed With The Hapten.
pdb|1H8O|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment
Length = 252
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 38 SQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMF 72
+QK +++A V+K M+LS E+ + F
Sbjct: 192 NQKFKDKATLTVDKSSSTAYMQLSSLTSEDSAVYF 226
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.129 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,609
Number of Sequences: 13198
Number of extensions: 16123
Number of successful extensions: 72
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 43
length of query: 101
length of database: 2,899,336
effective HSP length: 77
effective length of query: 24
effective length of database: 1,883,090
effective search space: 45194160
effective search space used: 45194160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)