BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644966|ref|NP_207136.1| hypothetical protein
[Helicobacter pylori 26695]
(188 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 27 1.5
pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) Fr... 25 4.3
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis... 25 4.3
pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9o... 25 4.3
pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis... 25 4.3
pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial... 25 5.6
pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotra... 25 7.3
pdb|1CII| Colicin Ia 25 7.3
pdb|1F9N|E Chain E, Crystal Structure Of Ahrc, The Arginine... 25 7.3
pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransfe... 25 7.3
pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial... 25 7.3
pdb|1QLE|C Chain C, Cryo-Structure Of The Paracoccus Denitr... 24 9.5
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 26.9 bits (58), Expect = 1.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 107 LIQKKRQIRENLKNRPNPLDTKNSPKERLSSVTEEIISKKQEELQSKE 154
L + + RE+L+ T N PK L+ +++ ++ E+L+ KE
Sbjct: 80 LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKE 127
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 252
Score = 25.4 bits (54), Expect = 4.3
Identities = 15/57 (26%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Query: 122 PNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLE 178
PN + K P + ++ + + E+ S PEG+ G ++ SV +E++ K E
Sbjct: 193 PNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSV-DELVGKLKE 248
>pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
Length = 356
Score = 25.4 bits (54), Expect = 4.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 131 PKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELK 181
PKE L S+ + + +K+E+ T + K+ + S E+I +EELK
Sbjct: 25 PKEELESINDVFLEEKKEDGPQVPTIDLKN----IESDDEKIRENCIEELK 71
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 25.4 bits (54), Expect = 4.3
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 127 TKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSV 168
T N P L +V E + K +E++ ++E + GE L V
Sbjct: 267 TINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERV 308
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 25.4 bits (54), Expect = 4.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 131 PKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELK 181
PKE L S+ + + +K+E+ T + K+ + S E+I +EELK
Sbjct: 25 PKEELESINDVFLEEKKEDGPQVPTIDLKN----IESDDEKIRENCIEELK 71
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstro
Length = 733
Score = 25.0 bits (53), Expect = 5.6
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 4/61 (6%)
Query: 127 TKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNK 186
T N P L +V E + + E++ ++E E GE L E + +E+ KA
Sbjct: 267 TINLPTYTLETVYEPVFGQPAEKVYAEEIAEAWASGEGL----ERVARYSMEDAKATYEL 322
Query: 187 G 187
G
Sbjct: 323 G 323
>pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 24.6 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 69 LLDTSSSFVWLLSALLIKW 87
+ +T +F W LS L+ KW
Sbjct: 235 MFNTPPTFAWYLSGLVFKW 253
>pdb|1CII| Colicin Ia
Length = 602
Score = 24.6 bits (52), Expect = 7.3
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 7/35 (20%)
Query: 132 KERLSSVTEEI------ISKKQEEL-QSKETPEGK 159
+ +LSSVTE + +++ +++L Q K TP+GK
Sbjct: 232 RNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGK 266
>pdb|1F9N|E Chain E, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
pdb|1F9N|B Chain B, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
pdb|1F9N|A Chain A, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
pdb|1F9N|F Chain F, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
pdb|1F9N|D Chain D, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
pdb|1F9N|C Chain C, Crystal Structure Of Ahrc, The Arginine RepressorACTIVATOR
Protein From Bacillus Subtilis
Length = 149
Score = 24.6 bits (52), Expect = 7.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 141 EIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNKGN 188
EII+ + E Q + K DG +++ T K+L +K N G+
Sbjct: 12 EIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGS 59
>pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJN|B Chain B, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJO|B Chain B, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 24.6 bits (52), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 69 LLDTSSSFVWLLSALLIKW 87
+ +T +F W LS L+ KW
Sbjct: 235 MFNTPPTFAWYLSGLVFKW 253
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 24.6 bits (52), Expect = 7.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 127 TKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEELKAKNNK 186
T N P L +V E + + +E++ ++E GE L E + +E+ KA
Sbjct: 267 TINLPTYTLETVYEPVFGQPKEKVYAEEIARAWESGEGL----ERVARYSMEDAKATYEL 322
Query: 187 G 187
G
Sbjct: 323 G 323
>pdb|1QLE|C Chain C, Cryo-Structure Of The Paracoccus Denitrificans
Four-Subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 273
Score = 24.3 bits (51), Expect = 9.5
Identities = 8/26 (30%), Positives = 13/26 (49%)
Query: 31 GFVIVAWLFRFKSIAFSILITLLVIW 56
GF AW + F + + L ++ IW
Sbjct: 246 GFEAAAWYWHFVDVVWLFLFVVIYIW 271
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,015,052
Number of Sequences: 13198
Number of extensions: 37040
Number of successful extensions: 86
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 12
length of query: 188
length of database: 2,899,336
effective HSP length: 83
effective length of query: 105
effective length of database: 1,803,902
effective search space: 189409710
effective search space used: 189409710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)