BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644968|ref|NP_207138.1| hypothetical protein
[Helicobacter pylori 26695]
(88 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A >gi|13096... 26 0.85
pdb|1DB9|A Chain A, Protein-Dna Recognition And Dna Deforma... 26 0.85
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp >gi|... 26 0.85
pdb|1DB7|A Chain A, Protein-Dna Recognition And Dna Deforma... 26 0.85
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Termin... 26 0.85
pdb|1CGP|A Chain A, Catabolite Gene Activator Protein Compl... 26 0.85
pdb|1RUO|B Chain B, Cap-Dna Recognition: Interactions Invol... 26 0.85
pdb|1HBZ|A Chain A, Catalase From Micrococcus Lysodeikticu 25 1.4
pdb|1GWE|A Chain A, Atomic Resolution Structure Of Micrococ... 24 2.5
pdb|1GWF|A Chain A, Compound Ii Structure Of Micrococcus Ly... 24 2.5
pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase >gi|182... 24 2.5
pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Me... 24 3.2
pdb|1HTA| Crystal Structure Of The Histone Hmfa From Meth... 23 4.2
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa F... 23 4.2
pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.... 22 9.4
pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimu... 22 9.4
pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface ... 22 9.4
pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus >... 22 9.4
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 48 VAVLIKDEEGKEMILSYLNQG 68
>pdb|1DB9|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 40 VAVLIKDEEGKEMILSYLNQG 60
>pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
Length = 210
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 48 VAVLIKDEEGKEMILSYLNQG 68
>pdb|1DB7|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DB8|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DBC|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1DBC|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 40 VAVLIKDEEGKEMILSYLNQG 60
>pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1RUN|A Chain A, Cap-Dna Recognition: Interactions Involving Aromatic
Amino Acids
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Cap-Dna Recognition: Interactions Involving Aromatic
Amino Acids
Length = 209
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 47 VAVLIKDEEGKEMILSYLNQG 67
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein Complex With Dna
(Cap-Dna Complex)
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein Complex With Dna
(Cap-Dna Complex)
Length = 205
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 47 VAVLIKDEEGKEMILSYLNQG 67
>pdb|1RUO|B Chain B, Cap-Dna Recognition: Interactions Involving Aromatic
Amino Acids
pdb|1RUO|A Chain A, Cap-Dna Recognition: Interactions Involving Aromatic
Amino Acids
Length = 209
Score = 25.8 bits (55), Expect = 0.85
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 62 ISILMKTPKGREILKEYLNEG 82
+++L+K +G+E++ YLN+G
Sbjct: 47 VAVLIKDEEGKEMILSYLNQG 67
>pdb|1HBZ|A Chain A, Catalase From Micrococcus Lysodeikticu
Length = 498
Score = 25.0 bits (53), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 38 YFFNEYDLTKNANRKEPERLRSQIISILMKTPK 70
Y FN +DLTK ++K+ R++ ++ L + PK
Sbjct: 272 YRFNPFDLTKTISQKDYPRIKVGTLT-LNRNPK 303
>pdb|1GWE|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase
pdb|1GWH|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase Complexed With Nadph
Length = 503
Score = 24.3 bits (51), Expect = 2.5
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 38 YFFNEYDLTKNANRKEPERLR 58
Y FN +DLTK ++K+ R++
Sbjct: 277 YRFNPFDLTKTISQKDYPRIK 297
>pdb|1GWF|A Chain A, Compound Ii Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 24.3 bits (51), Expect = 2.5
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 38 YFFNEYDLTKNANRKEPERLR 58
Y FN +DLTK ++K+ R++
Sbjct: 277 YRFNPFDLTKTISQKDYPRIK 297
>pdb|1FUG|A Chain A, S-Adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-Adenosylmethionine Synthetase
pdb|1MXA| S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB| S-Adenosylmethionine Synthetase With Adp
pdb|1MXC| S-Adenosylmethionine Synthetase With 8-Br-Adp
pdb|1XRA| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain:
Null; Synonym: Mat, Atp:l-Methionine
S-Adenosyltransferase; Ec: 2.5.1.6; Biological_unit:
Homotetramer
pdb|1XRC| Mol_id: 1; Molecule: S-Adenosylmethionine Synthetase; Chain:
Null; Synonym: Mat, Atp:l-Methionine
S-Adenosyltransferase; Ec: 2.5.1.6; Other_details:
Crystallized With Two Co Ions Instead Of Mg Ions;
Biological_unit: Homotetramer
Length = 383
Score = 24.3 bits (51), Expect = 2.5
Identities = 12/47 (25%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Query: 46 TKNANRKEPERLRSQII-----SILMKTPKGREILKEYLNEGCILLG 87
+++ + P+++ QI +IL + PK R + Y+ G +L+G
Sbjct: 7 SESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVG 53
>pdb|1XRB| S-Adenosylmethionine Synthetase (Mat, Atp: L-Methionine
S-Adenosyltransferase, E.C.2.5.1.6) In Which Met
Residues Are Replaced With Selenomethionine Residues
(Mse)
Length = 383
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Query: 46 TKNANRKEPERLRSQII-----SILMKTPKGREILKEYLNEGCILLG 87
+++ + P+++ QI +IL + PK R + Y+ G +L+G
Sbjct: 7 SESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVG 53
>pdb|1HTA| Crystal Structure Of The Histone Hmfa From Methanothermus
Fervidus
Length = 69
Score = 23.5 bits (49), Expect = 4.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 3 ILKLEGCEKHCKK-KYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRK 52
I+K G E+ + A+ KV++E+G E+ S++V L K+A RK
Sbjct: 12 IIKNAGAERVSDDARIALAKVLEEMGEEIASEAV--------KLAKHAGRK 54
>pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 23.5 bits (49), Expect = 4.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 3 ILKLEGCEKHCKK-KYAIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANRK 52
I+K G E+ + A+ KV++E+G E+ S++V L K+A RK
Sbjct: 11 IIKNAGAERVSDDARIALAKVLEEMGEEIASEAV--------KLAKHAGRK 53
>pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.C.2.4.2.10)
Length = 213
Score = 22.3 bits (46), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 16 KYAIEKVIKEVG-LELKSKSVMPYFFN 41
++A+ K + + G LKS PYFFN
Sbjct: 10 EFALNKQVLKFGEFTLKSGRKSPYFFN 36
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR| Mol_id: 1; Molecule: Orotate Phosphoribosyltransferase; Chain:
Null; Synonym: Oprtase; Ec: 2.4.2.10; Engineered: Yes
Length = 213
Score = 22.3 bits (46), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 16 KYAIEKVIKEVG-LELKSKSVMPYFFN 41
++A+ K + + G LKS PYFFN
Sbjct: 10 EFALNKQVLKFGEFTLKSGRKSPYFFN 36
>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
Length = 213
Score = 22.3 bits (46), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 1/27 (3%)
Query: 16 KYAIEKVIKEVG-LELKSKSVMPYFFN 41
++A+ K + + G LKS PYFFN
Sbjct: 10 EFALSKQVLKFGEFTLKSGRKSPYFFN 36
>pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 22.3 bits (46), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 45 LTKNANRKEPERLRSQIISI---LMKTPKGREILKEYLNEGCI 84
+ K +E ERL+ + P+ RE+LKE++ G I
Sbjct: 161 IAKVEREREIERLKEKFGDFGSGYASDPRTREVLKEWIASGRI 203
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,280
Number of Sequences: 13198
Number of extensions: 15535
Number of successful extensions: 72
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 18
length of query: 88
length of database: 2,899,336
effective HSP length: 64
effective length of query: 24
effective length of database: 2,054,664
effective search space: 49311936
effective search space used: 49311936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)