BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644969|ref|NP_207139.1| hypothetical protein
[Helicobacter pylori 26695]
         (31 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DXR|M  Chain M, Photosynthetic Reaction Center From Rho...    23  7.5

>pdb|1DXR|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis - His L168 Phe Mutant (Terbutryn Complex)
 pdb|6PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Dg-420314 (Triazine) Complex)
 pdb|1PRC|M Chain M, Photosynthetic Reaction Center
 pdb|5PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Atrazine Complex)
 pdb|4PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Stigmatellin Complex)
 pdb|3PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Qb-Depleted)
 pdb|2PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Ubiquinone-2 Complex)
 pdb|7PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
           Viridis (Dg-420315 (Triazine) Complex)
          Length = 323

 Score = 23.1 bits (48), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 4   NFKKAFFRALCLGAL--CLLGEW 24
           NF  A F  LC+G +   L+G W
Sbjct: 147 NFAAAIFFVLCIGCIHPTLVGSW 169



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.336    0.148    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,945
Number of Sequences: 13198
Number of extensions: 2649
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 1
length of query: 31
length of database: 2,899,336
effective HSP length: 7
effective length of query: 24
effective length of database: 2,806,950
effective search space: 67366800
effective search space used: 67366800
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.7 bits)