BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644973|ref|NP_207143.1| hypothetical protein
[Helicobacter pylori 26695]
(111 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-26... 31 0.017
pdb|1LD4|A Chain A, Placement Of The Structural Proteins In... 30 0.029
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 30 0.050
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 0.11
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 28 0.11
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 28 0.11
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 28 0.11
pdb|1KIL|E Chain E, Three-Dimensional Structure Of The Comp... 28 0.15
pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain... 28 0.19
pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 I... 28 0.19
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 28 0.19
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 27 0.25
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 27 0.25
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 27 0.25
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 27 0.25
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 27 0.32
pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO 27 0.32
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 27 0.32
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 26 0.55
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 26 0.72
pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s ... 26 0.72
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 25 0.94
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 25 0.94
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 25 1.6
pdb|1QB3|B Chain B, Crystal Structure Of The Cell Cycle Reg... 24 2.1
pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals ... 23 3.6
pdb|1B43|A Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|... 23 3.6
pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal ... 23 3.6
pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core ... 23 3.6
pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box... 23 3.6
pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome... 23 3.6
pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 23 6.1
pdb|1TAM| Human Immunodeficiency Virus, Nmr, Minimized Av... 23 6.1
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S >gi... 23 6.1
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 23 6.1
pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 23 6.1
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 22 8.0
pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (... 22 8.0
pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (... 22 8.0
>pdb|1KXF| Sindbis Virus Capsid, (Wild-Type) Residues 1-264, Tetragonal
Crystal Form (Form Ii)
Length = 264
Score = 31.2 bits (69), Expect = 0.017
Identities = 12/56 (21%), Positives = 32/56 (56%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYIF 65
+ RP+ P ++KQ P++ + K+ K ++K K++ ++K +++ + + +F
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLF 116
Score = 30.0 bits (66), Expect = 0.038
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
P+ + P +++++ KQ KPK+ K + K K+Q K
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
>pdb|1LD4|A Chain A, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|B Chain B, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|C Chain C, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|D Chain D, Placement Of The Structural Proteins In Sindbis Virus
Length = 264
Score = 30.4 bits (67), Expect = 0.029
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 13 RPKLEPEKQKQEPEE-------QKQEKQDKQEQKPKQEKEESKSKEQEENK 56
RP+ P ++KQ P++ + QEK+ KQ KPK K + + + E ++
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKTQEKKKKQPAKPKPGKRQRMALKLEADR 114
Score = 29.6 bits (65), Expect = 0.050
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
P+ + P +++++ KQ KPK+ K + K K+Q K
Sbjct: 60 PQPPRPRPPPRQKKQAPKQPPKPKKPKTQEKKKKQPAKPK 99
Score = 27.3 bits (59), Expect = 0.25
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 23 QEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
Q P + +Q KQ PKQ + K K QE+ KKQ
Sbjct: 61 QPPRPRPPPRQKKQA--PKQPPKPKKPKTQEKKKKQ 94
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 29.6 bits (65), Expect = 0.050
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 22 KQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
KQ+ EQ +K +++E K ++EK+E + KE+++
Sbjct: 229 KQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
Score = 24.3 bits (51), Expect = 2.1
Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 32 KQDKQEQKPKQ-EKEESKSKEQEENKKQK 59
KQ + EQ K+ E+EE+K++ +++ K+QK
Sbjct: 229 KQKEVEQLIKKHEEEEAKAEREKKEKEQK 257
Score = 23.9 bits (50), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 4/28 (14%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEESK 48
+K E EE K E+ E+K K++KE+ K
Sbjct: 238 KKHEEEEAKAER----EKKEKEQKEKDK 261
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.5 bits (62), Expect = 0.11
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEP---------EEQKQEKQDKQEQKPKQEKEESKSKEQ 52
E ++ + E+ R +L +KQ+ E EE+++ Q Q +K K +++ +EQ
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 53 EENKKQKR 60
E ++ R
Sbjct: 964 LEEEEAAR 971
Score = 26.2 bits (56), Expect = 0.55
Identities = 15/59 (25%), Positives = 35/59 (58%), Gaps = 1/59 (1%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
ME ++E+ E+++ +L+ EK+K + + E+Q ++E+ +Q+ + K + KK +
Sbjct: 932 MEARIEEEEERSQ-QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Score = 26.2 bits (56), Expect = 0.55
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
+ ++ E+ E+A+ L K K E + E + K+E+K +QE E+ K K + E+
Sbjct: 1016 LTTNLAEEEEKAK-NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 24.3 bits (51), Expect = 2.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
E++R +LE K+K E E +Q + Q E + +K++EE
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Score = 23.9 bits (50), Expect = 2.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
+E+L+ A +LE E Q+ K+ ++ + QE ES+ + + +KQKR
Sbjct: 1094 EEELQAALARLEDE-TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/45 (28%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 17 EPEKQKQEPEEQK-QEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
E E Q ++ E Q+ +E+Q K E + K+ +++ +E+N Q++
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900
Score = 22.3 bits (46), Expect = 8.0
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 6 KEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
+++L Q + + E E + E + + KQE + + E++ +E+EE +Q
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ 945
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 28.5 bits (62), Expect = 0.11
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 3 NDVKE--DLEQARPKLEPEKQKQEPEEQKQEKQDKQ 36
+D++E D E+ + E E Q EPE ++EK+DK+
Sbjct: 340 DDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 375
Score = 26.9 bits (58), Expect = 0.32
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 2 ENDVKEDLEQA-----RPKLEPEKQKQE--PEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
E+DV +++ + R +L+ +E EE++ E+++ + Q P+ E E + +++E
Sbjct: 317 EDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 375
Score = 25.8 bits (55), Expect = 0.72
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQ 52
+L++ E +++E EE++ E Q + + ++EKE+ + ++
Sbjct: 335 ELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 379
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/35 (25%), Positives = 19/35 (53%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDK 35
+ ++ +ED E+ PE + E E++ +E D+
Sbjct: 345 LTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 379
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 28.5 bits (62), Expect = 0.11
Identities = 12/42 (28%), Positives = 27/42 (63%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEE 46
+K + + + + E+ E E++K+E +K+++K ++EKEE
Sbjct: 305 MKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Score = 26.9 bits (58), Expect = 0.32
Identities = 12/45 (26%), Positives = 29/45 (63%), Gaps = 1/45 (2%)
Query: 16 LEPEKQKQEPEEQKQEKQ-DKQEQKPKQEKEESKSKEQEENKKQK 59
+E ++ K + E+K +KQ ++ + +++K E KE+E+ +++K
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREK 344
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 28.5 bits (62), Expect = 0.11
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 3 NDVKE--DLEQARPKLEPEKQKQEPEEQKQEKQDKQ 36
+D++E D E+ + E E Q EPE ++EK+DK+
Sbjct: 341 DDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
Score = 26.9 bits (58), Expect = 0.32
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 2 ENDVKEDLEQA-----RPKLEPEKQKQE--PEEQKQEKQDKQEQKPKQEKEESKSKEQE 53
E+DV +++ + R +L+ +E EE++ E+++ + Q P+ E E + +++E
Sbjct: 318 EDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
Score = 25.8 bits (55), Expect = 0.72
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 8 DLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQ 52
+L++ E +++E EE++ E Q + + ++EKE+ + ++
Sbjct: 336 ELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
Score = 22.3 bits (46), Expect = 8.0
Identities = 9/35 (25%), Positives = 19/35 (53%)
Query: 1 MENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDK 35
+ ++ +ED E+ PE + E E++ +E D+
Sbjct: 346 LTDEEEEDEEEEAESQSPEPETSEEEKEDKELADE 380
>pdb|1KIL|E Chain E, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 49
Score = 28.1 bits (61), Expect = 0.15
Identities = 12/43 (27%), Positives = 25/43 (57%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
+P+ K+E E Q+ +Q ++E+K K K E++ + + + K
Sbjct: 4 DPDAAKKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDK 46
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 27.7 bits (60), Expect = 0.19
Identities = 14/52 (26%), Positives = 26/52 (49%)
Query: 3 NDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEE 54
ND+ + +R +PE QK E +++ + D KP E++ +K +E
Sbjct: 221 NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDE 272
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With
Its Inhibitor Im7 Protein
Length = 206
Score = 27.7 bits (60), Expect = 0.19
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSK 50
LE KQK+ E+ + K DK+ ++ K K K K
Sbjct: 54 LERRKQKENKEKDAKAKLDKESKRNKPGKATGKGK 88
Score = 23.9 bits (50), Expect = 2.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQK 59
E +KQ++ +++ K K +KE ++K + K K
Sbjct: 55 ERRKQKENKEKDAKAKLDKESKRNKPGKATGKGK 88
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 592
Score = 27.7 bits (60), Expect = 0.19
Identities = 14/38 (36%), Positives = 25/38 (64%), Gaps = 1/38 (2%)
Query: 19 EKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
+K K + +++K + D +++KPK+E EE K K EE +
Sbjct: 1 KKPKNKDKDKKVPEPDNKKKKPKKE-EEQKWKWWEEER 37
Score = 25.4 bits (54), Expect = 0.94
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
D + DL+ A+ + K + + + +K+ Q + + K E ++ ++EENK+
Sbjct: 487 DARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 540
Score = 24.6 bits (52), Expect = 1.6
Identities = 10/30 (33%), Positives = 21/30 (69%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEE 46
+ +K+ EP+ +K++ + ++EQK K +EE
Sbjct: 7 DKDKKVPEPDNKKKKPKKEEEQKWKWWEEE 36
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 27.3 bits (59), Expect = 0.25
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
L+P+ +++ +E K+ +K K+ K S + EQE +K+ S
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 27.3 bits (59), Expect = 0.25
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
K K + +++K + D +++KPK+E EE K K EE +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE-EEQKWKWWEEER 36
Score = 24.6 bits (52), Expect = 1.6
Identities = 10/30 (33%), Positives = 21/30 (69%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEE 46
+ +K+ EP+ +K++ + ++EQK K +EE
Sbjct: 6 DKDKKVPEPDNKKKKPKKEEEQKWKWWEEE 35
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 27.3 bits (59), Expect = 0.25
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRS 61
L+P+ +++ +E K+ +K K+ K S + EQE +K+ S
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 27.3 bits (59), Expect = 0.25
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 20 KQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENK 56
K K + +++K + D +++KPK+E EE K K EE +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE-EEQKWKWWEEER 36
Score = 24.6 bits (52), Expect = 1.6
Identities = 10/30 (33%), Positives = 21/30 (69%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEE 46
+ +K+ EP+ +K++ + ++EQK K +EE
Sbjct: 6 DKDKKVPEPDNKKKKPKKEEEQKWKWWEEE 35
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 26.9 bits (58), Expect = 0.32
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQ 42
+ R E E+++ E EE+++E+Q+ ++Q K+
Sbjct: 139 DSGRAVAEDEEEEDEDEEEEEEEQNARDQATKK 171
Score = 22.7 bits (47), Expect = 6.1
Identities = 8/31 (25%), Positives = 18/31 (57%)
Query: 30 QEKQDKQEQKPKQEKEESKSKEQEENKKQKR 60
++ +D + E+EE + +E+EE ++ R
Sbjct: 135 EQTEDSGRAVAEDEEEEDEDEEEEEEEQNAR 165
>pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO
Length = 184
Score = 26.9 bits (58), Expect = 0.32
Identities = 12/39 (30%), Positives = 24/39 (60%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKE 45
E++ Q K E + + + EE KQ+ Q++ E++ + E+E
Sbjct: 140 EEVHQLSRKAETKLAEAQIEELKQKTQEEGEERAESEQE 178
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 26.9 bits (58), Expect = 0.32
Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 5 VKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
VK L +P + +Q+Q P+E+++E++D++ Q ++K + + + ++
Sbjct: 239 VKGGLSVIKPPTD--EQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRR 290
Score = 25.8 bits (55), Expect = 0.72
Identities = 9/26 (34%), Positives = 19/26 (72%)
Query: 34 DKQEQKPKQEKEESKSKEQEENKKQK 59
D+Q+Q+P++E+EE + ++ + K K
Sbjct: 251 DEQQQRPQEEEEEEEDEKPQCKGKDK 276
Score = 23.1 bits (48), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 21 QKQEPEEQKQEKQDKQEQKPKQEKEE 46
Q+QE + +QE+ Q QK K ++EE
Sbjct: 169 QEQEFLKYQQEQGGHQSQKGKHQQEE 194
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 26.2 bits (56), Expect = 0.55
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 6 KEDLEQARPKLE---PEKQKQEPEEQKQEKQDKQE---------QKPKQEKEESKSKEQE 53
KE LEQAR +E E +K P+ +K+ K + Q+ ++ +E S +E
Sbjct: 73 KEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEE 132
Query: 54 ENKK 57
NKK
Sbjct: 133 TNKK 136
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 25.8 bits (55), Expect = 0.72
Identities = 12/49 (24%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 2 ENDVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSK 50
E + E+ E+ +E + ++E EE+++EK K E++ ++ ++ + K
Sbjct: 7 EKEGNENAEEEAAAIE--EARREAEERRKEKHRKMEEEREEMRQTIRDK 53
Score = 23.9 bits (50), Expect = 2.7
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 19 EKQKQEPEEQKQ---EKQDKQEQKPKQEKEESKSKEQEENKKQKRSSY 63
EK+ E E++ E+ ++ ++ ++EK +E+EE ++ R Y
Sbjct: 7 EKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEEREEMRQTIRDKY 54
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 25.8 bits (55), Expect = 0.72
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 37 EQKPKQEKEESKSKEQEENKKQKRSS 62
E+ K E K KE+ E KKQK++S
Sbjct: 223 EEIEKYVAEIEKEKEENEKKKQKKAS 248
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 17 EPEKQKQEPEEQKQEK 32
E EK+K+E E++KQ+K
Sbjct: 231 EIEKEKEENEKKKQKK 246
Score = 22.3 bits (46), Expect = 8.0
Identities = 8/24 (33%), Positives = 18/24 (74%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQ 30
E++E+ ++E EK++ E ++QK+
Sbjct: 223 EEIEKYVAEIEKEKEENEKKKQKK 246
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 25.4 bits (54), Expect = 0.94
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
D + DL+ A+ + K + + + +K+ Q + + K E ++ ++EENK+
Sbjct: 459 DARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 512
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 25.4 bits (54), Expect = 0.94
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKK 57
D + DL+ A+ + K + + + +K+ Q + + K E ++ ++EENK+
Sbjct: 458 DARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 511
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf):
Wild- Type Lf Complexed With The N-Terminal Sequence Of
Mapkk2
Length = 776
Score = 24.6 bits (52), Expect = 1.6
Identities = 11/30 (36%), Positives = 21/30 (69%), Gaps = 3/30 (10%)
Query: 29 KQEKQDKQEQKPKQEKEESKSKEQEENKKQ 58
K+++++K E K K+E ++K QEE+ K+
Sbjct: 12 KEKEKNKDENK---RKDEERNKTQEEHLKE 38
Score = 23.9 bits (50), Expect = 2.7
Identities = 8/22 (36%), Positives = 17/22 (76%)
Query: 38 QKPKQEKEESKSKEQEENKKQK 59
++ ++ K+E+K K++E NK Q+
Sbjct: 12 KEKEKNKDENKRKDEERNKTQE 33
>pdb|1QB3|B Chain B, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
pdb|1QB3|A Chain A, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
pdb|1QB3|C Chain C, Crystal Structure Of The Cell Cycle Regulatory Protein
Cks1
Length = 150
Score = 24.3 bits (51), Expect = 2.1
Identities = 8/27 (29%), Positives = 20/27 (73%)
Query: 27 EQKQEKQDKQEQKPKQEKEESKSKEQE 53
+Q+Q++Q +Q+Q+ +Q + +S S + +
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQSISNDMQ 144
Score = 22.3 bits (46), Expect = 8.0
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 19 EKQKQEPEEQKQEKQDKQEQ 38
++Q+Q+ ++Q+Q++Q Q Q
Sbjct: 118 QQQQQQQQQQQQQQQQHQTQ 137
>pdb|1GO4|E Chain E, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|F Chain F, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|G Chain G, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|H Chain H, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 100
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 7 EDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQ 38
E+LE R +LE EK+ E + +++ Q +Q
Sbjct: 22 EELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 23.5 bits (49), Expect = 3.6
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 17 EPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEENKKQKRSSYI 64
EP + K++ E+++E +++ E+K ++ E K + +E K +R++ +
Sbjct: 82 EPPEFKKKELEKRREAREEAEEKWREALE--KGEIEEARKYAQRATRV 127
>pdb|2HIO|B Chain B, Histone Octamer (Chicken), Chromosomal Protein
Length = 125
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQ 52
PE K P +K K+ + + K +K+ KS+++
Sbjct: 1 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 35
Score = 22.7 bits (47), Expect = 6.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQE 43
E A+ P+K ++ + Q+K DK+ +K ++E
Sbjct: 2 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 35
>pdb|1EQZ|B Chain B, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|F Chain F, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|B Chain B, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|F Chain F, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
Length = 126
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 18 PEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQ 52
PE K P +K K+ + + K +K+ KS+++
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 22.7 bits (47), Expect = 6.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 10 EQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQE 43
E A+ P+K ++ + Q+K DK+ +K ++E
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human
Upstream Binding Factor
Length = 99
Score = 23.5 bits (49), Expect = 3.6
Identities = 13/41 (31%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 15 KLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKSKEQEEN 55
K+ +K K+ PE++K K + Q+ KQE E + ++ +E++
Sbjct: 43 KILSKKYKELPEKKKM-KYIQDFQREKQEFERNLARFREDH 82
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 254
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 16 LEPEKQKQEPEEQKQEKQDKQEQKPKQE 43
L E+ Q + +QEKQ++QEQ K++
Sbjct: 224 LSSEEINQYVTQIEQEKQEQQEQDKKKK 251
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
Length = 394
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKE 51
E+Q+ E++ ++E K EK+ K K+
Sbjct: 10 EDQRNEEKAQREANKKIEKQLQKDKQ 35
>pdb|1TAM| Human Immunodeficiency Virus, Nmr, Minimized Average Structure
Length = 132
Score = 22.7 bits (47), Expect = 6.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 28 QKQEKQDKQEQKPKQEKEESKSKEQEE 54
Q+ E +D +E K E+E++KSK++ +
Sbjct: 90 QRIEIKDTKEALDKIEEEQNKSKKKAQ 116
>pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
Length = 388
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKE 51
E+Q+ E++ ++E K EK+ K K+
Sbjct: 10 EDQRNEEKAQREANKKIEKQLQKDKQ 35
>pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
Length = 402
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKE 51
E+Q+ E++ ++E K EK+ K K+
Sbjct: 10 EDQRNEEKAQREANKKIEKQLQKDKQ 35
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 26 EEQKQEKQDKQEQKPKQEKEESKSKE 51
E+Q+ E++ ++E K EK+ K K+
Sbjct: 10 EDQRNEEKAQREANKKIEKQLQKDKQ 35
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 22.3 bits (46), Expect = 8.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 4 DVKEDLEQARPKLEPEKQKQEPEEQKQEKQDKQEQKPKQEKEESKS 49
D DLE K K+ + E+ + K D ++K ++ E K+
Sbjct: 32 DALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDAENHKA 77
>pdb|1GPH|1 Chain 1, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|2 Chain 2, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|3 Chain 3, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
pdb|1GPH|4 Chain 4, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase (E.C.2.4.2.14)
Length = 465
Score = 22.3 bits (46), Expect = 8.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 94 DKPKNSLSMLKNFY 107
D+ KNSLSMLK Y
Sbjct: 145 DQIKNSLSMLKGAY 158
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 22.3 bits (46), Expect = 8.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 94 DKPKNSLSMLKNFY 107
D+ KNSLSMLK Y
Sbjct: 145 DQIKNSLSMLKGAY 158
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.305 0.127 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,764
Number of Sequences: 13198
Number of extensions: 20068
Number of successful extensions: 151
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 101
length of query: 111
length of database: 2,899,336
effective HSP length: 87
effective length of query: 24
effective length of database: 1,751,110
effective search space: 42026640
effective search space used: 42026640
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 46 (22.3 bits)