BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644974|ref|NP_207144.1| hypothetical protein
[Helicobacter pylori 26695]
(260 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 32 0.056
pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From ... 30 0.28
pdb|1PCI|A Chain A, Procaricain >gi|2098465|pdb|1PCI|B Chai... 27 3.1
pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragmen... 26 4.0
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 26 4.0
pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hy... 26 5.3
pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Db... 26 5.3
pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphospha... 26 5.3
pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovin... 26 5.3
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 26 5.3
pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 26 5.3
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 26 5.3
pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Des... 26 5.3
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolob... 26 5.3
pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex Wit... 26 5.3
pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 26 5.3
pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 6.9
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With ... 25 6.9
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 25 6.9
pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human ... 25 6.9
pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 6.9
pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campyloba... 25 6.9
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 32.3 bits (72), Expect = 0.056
Identities = 26/94 (27%), Positives = 49/94 (51%), Gaps = 8/94 (8%)
Query: 19 ALFVAKKIGLSAEDAVANVLQ----EKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVS 74
A+ + K+ GL+ ED A ++ K LGK Q+ D T L++ G+ ++++EK+
Sbjct: 305 AIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHF 364
Query: 75 ETALKGV----DTDLSQNAKILDTLGDEVARKLK 104
+ + + D +Q +IL +G E A+ L+
Sbjct: 365 DKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ 398
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
Length = 605
Score = 30.0 bits (66), Expect = 0.28
Identities = 28/97 (28%), Positives = 42/97 (42%), Gaps = 19/97 (19%)
Query: 40 EKLLGKDYKQRLDAITKKLSKTYG-SLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDE 98
+++ GKDY LD K +K YG L Q E F + A ++LD D+
Sbjct: 240 KRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAF-----------RLLDKYQDK 288
Query: 99 VARKLKANFTGAIGATAG--VSGLAIAAKLTPKLMAK 133
F I TA V+GL ++T KL+++
Sbjct: 289 YTM-----FNDDIQGTASVIVAGLLTCTRVTKKLVSQ 320
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 26.6 bits (57), Expect = 3.1
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 179 FNYIDEWLHRDDFKKEILNNINEVKENLKNSY-----------KQQFNDSFV------KI 221
+ +DE L+R + K+ LN I+E + NSY +FN+ +V I
Sbjct: 33 YENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSNDEFNEKYVGSLIDATI 91
Query: 222 SQEFQKSFKNAPVV 235
Q + + F N +V
Sbjct: 92 EQSYDEEFINEDIV 105
>pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|E Chain E, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|B Chain B, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|E Chain E, Crystal Structure Of Crosslinked Fragment D
pdb|1FZE|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZC|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZG|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 328
Score = 26.2 bits (56), Expect = 4.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 62 YGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVAR 101
Y S L +H+ ++ ET + T+L IL+ L ++ +
Sbjct: 9 YSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQK 48
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 26.2 bits (56), Expect = 4.0
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 50 RLDAITKKLSKTYGSLLNQHEKFVSETA------LKGVDTDLSQNAKILDTLGDEVARKL 103
R+D IT+ L + L + +V +TA L ++ + ++ LD+L D +A
Sbjct: 114 RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173
Query: 104 KANFTGAIGATAGVS 118
A+ A + +S
Sbjct: 174 PMVVANAVAALSEIS 188
>pdb|1H2R|L Chain L, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
Length = 534
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 215 NDSFVKISQEFQKSFKNAPVVEKKTIKEHI 244
N F K F++ FKN +K I+EH+
Sbjct: 292 NSRFFKPGVVFKRDFKNIKPFDKMQIEEHV 321
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 19 ALFVAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVSETAL 78
A + A+K+G+ A + +Q Y I + S +LLN+H + ++
Sbjct: 51 ANYEARKLGVKAGMPIIKAMQIAP-SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASI 109
Query: 79 KGVDTDLSQNAKILDTLGDEVARKLKANF--TGAIGATAGVSGLAIAAKL 126
D++ + G E+ARK+K I T GV+ I AK+
Sbjct: 110 DEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKI 159
>pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Bifunctional
Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 25.8 bits (55), Expect = 5.3
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 13 GDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQR-LDAITKKLSKTYGSLLNQHEK 71
G+ + F + I + E AN++Q KL DY R D T+ + N +E
Sbjct: 145 GEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYES 204
Query: 72 FVSETALKGVDTDLSQNAKILD 93
E D DLS KI+D
Sbjct: 205 LDEEQ-----DRDLSY-IKIMD 220
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 62 YGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVAR 101
Y S L +H+ ++ ET + T L IL+ L ++ +
Sbjct: 89 YSSHLEKHQLYIDETVKNNIPTKLRVLRSILENLRSKIQK 128
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/133 (20%), Positives = 60/133 (44%), Gaps = 15/133 (11%)
Query: 34 VANVLQEKLLGKDYKQRLDAITKKLS------KTYGSLLNQHEKFVS-ETALKGVDTDLS 86
V+++L+E++LG D L+ + LS + +G Q E+ V + LKG+ +L
Sbjct: 8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLE 67
Query: 87 -QNAKILDTLGDEVARKLKANFTGAIGATAGVSGLAIAAKLTPKLMAKIGAKLGAK--VG 143
N ++ D++ ++ + T + + + +L +++ +G + K +G
Sbjct: 68 PDNVGVVVFGNDKLIKE-----GDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIG 122
Query: 144 GKFLAKIGTALSG 156
K ++G G
Sbjct: 123 SKARRRVGLKAPG 135
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 25.8 bits (55), Expect = 5.3
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 13 GDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQR-LDAITKKLSKTYGSLLNQHEK 71
G+ + F + I + E AN++Q KL DY R D T+ + N +E
Sbjct: 145 GEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYES 204
Query: 72 FVSETALKGVDTDLSQNAKILD 93
E D DLS KI+D
Sbjct: 205 LDEEQ-----DRDLSY-IKIMD 220
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/133 (20%), Positives = 60/133 (44%), Gaps = 15/133 (11%)
Query: 34 VANVLQEKLLGKDYKQRLDAITKKLS------KTYGSLLNQHEKFVS-ETALKGVDTDLS 86
V+++L+E++LG D L+ + LS + +G Q E+ V + LKG+ +L
Sbjct: 8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLE 67
Query: 87 -QNAKILDTLGDEVARKLKANFTGAIGATAGVSGLAIAAKLTPKLMAKIGAKLGAK--VG 143
N ++ D++ ++ + T + + + +L +++ +G + K +G
Sbjct: 68 PDNVGVVVFGNDKLIKE-----GDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIG 122
Query: 144 GKFLAKIGTALSG 156
K ++G G
Sbjct: 123 SKARRRVGLKAPG 135
>pdb|1H2A|L Chain L, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
Length = 567
Score = 25.8 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 215 NDSFVKISQEFQKSFKNAPVVEKKTIKEHI 244
N F K F++ FKN +K I+EH+
Sbjct: 310 NSRFFKPGVVFKRDFKNIKPFDKMQIEEHV 339
>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
Length = 354
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 19 ALFVAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVSETAL 78
A + A+K+G+ A + +Q Y I + S +LLN+H + ++
Sbjct: 46 ANYEARKLGVKAGMPIIKAMQIAP-SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASI 104
Query: 79 KGVDTDLSQNAKILDTLGDEVARKLKANF--TGAIGATAGVSGLAIAAKL 126
D++ + G E+ARK+K I T GV+ I AK+
Sbjct: 105 DEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKI 154
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 919
Score = 25.8 bits (55), Expect = 5.3
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 115 AGVSGLAIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFG 174
+GV G A KL K + K G +A + + TCG C +GL G
Sbjct: 178 SGVEG-ADVVKLLNKAIKKRG-----DYDANIVAVVNDTVGTMMTCGYDDQQCEVGLIIG 231
Query: 175 SDAAFNYIDEWLHRD 189
+ Y++E H D
Sbjct: 232 TGTNACYMEELRHID 246
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 25.8 bits (55), Expect = 5.3
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 13 GDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQR-LDAITKKLSKTYGSLLNQHEK 71
G+ + F + I + E AN++Q KL DY R D T+ + N +E
Sbjct: 144 GEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYES 203
Query: 72 FVSETALKGVDTDLSQNAKILD 93
E D DLS KI+D
Sbjct: 204 LDEEQ-----DRDLSY-IKIMD 219
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 25.4 bits (54), Expect = 6.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 115 AGVSGLAIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFG 174
+GV G A KL K + K G +A + + TCG C +GL G
Sbjct: 178 SGVEG-ADVVKLLNKAIKKRG-----DYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIG 231
Query: 175 SDAAFNYIDEWLHRD 189
+ Y++E H D
Sbjct: 232 TGTNACYMEELRHID 246
>pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
Length = 917
Score = 25.4 bits (54), Expect = 6.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 115 AGVSGLAIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFG 174
+GV G A KL K + K G +A + + TCG C +GL G
Sbjct: 178 SGVEG-ADVVKLLNKAIKKRG-----DYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIG 231
Query: 175 SDAAFNYIDEWLHRD 189
+ Y++E H D
Sbjct: 232 TGTNACYMEELRHID 246
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 25.4 bits (54), Expect = 6.9
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 27 GLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSKTYGSLLNQHEKFVSETALKGVDTDLS 86
G+ A + + NVL+ K + +YK + ++++ LL H+K E L + +
Sbjct: 435 GIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQV-QLLLTHQKSNIEFKLLYKQLNFT 493
Query: 87 QN 88
+N
Sbjct: 494 EN 495
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 25.4 bits (54), Expect = 6.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 115 AGVSGLAIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFG 174
+GV G A KL K + K G +A + + TCG C +GL G
Sbjct: 178 SGVEG-ADVVKLLNKAIKKRG-----DYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIG 231
Query: 175 SDAAFNYIDEWLHRD 189
+ Y++E H D
Sbjct: 232 TGTNACYMEELRHID 246
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 25.4 bits (54), Expect = 6.9
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 115 AGVSGLAIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFG 174
+GV G A KL K + K G +A + + TCG C +GL G
Sbjct: 178 SGVEG-ADVVKLLNKAIKKRG-----DYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIG 231
Query: 175 SDAAFNYIDEWLHRD 189
+ Y++E H D
Sbjct: 232 TGTNACYMEELRHID 246
>pdb|1KRQ|A Chain A, Crystal Structure Analysis Of Campylobacter Jejuni
Ferritin
Length = 167
Score = 25.4 bits (54), Expect = 6.9
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 190 DFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEK--KTIKEHI 244
D K+++ +NE +++ +Q +F + F+K++++ + K T+ EH+
Sbjct: 52 DHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSINTLVEHM 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,474,609
Number of Sequences: 13198
Number of extensions: 59414
Number of successful extensions: 146
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 28
length of query: 260
length of database: 2,899,336
effective HSP length: 86
effective length of query: 174
effective length of database: 1,764,308
effective search space: 306989592
effective search space used: 306989592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)