BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644975|ref|NP_207145.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(298 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KSK|A Chain A, Structure Of Rsua >gi|20664191|pdb|1KSL... 28 0.97
pdb|1HIB| Interleukin-1 Beta (Human) Mutant With Thr 9 Re... 26 6.3
pdb|1IOB| Interleukin-1 Beta From Joint X-Ray And Nmr Ref... 26 6.3
pdb|41BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 8... 26 6.3
pdb|21BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 7... 26 6.3
pdb|31BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 7... 26 6.3
>pdb|1KSK|A Chain A, Structure Of Rsua
pdb|1KSL|A Chain A, Structure Of Rsua
pdb|1KSV|A Chain A, Structure Of Rsua
Length = 234
Score = 28.5 bits (62), Expect = 0.97
Identities = 40/185 (21%), Positives = 75/185 (39%), Gaps = 35/185 (18%)
Query: 91 PKGYFY------HESLLDCIQSHFGKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQ 144
P+GY H ++L + H A RLD +T+GLVL T + +
Sbjct: 71 PQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLX--TDDGQWSHRITSPR 128
Query: 145 KKVKKTYLALAHGLVEKSMKIDKPIL--TPQNIQKDLHIRSKISPLGKQSITLVEPLSYN 202
+KTYL + ++ P+ T + K + + ++ + ++ P
Sbjct: 129 HHCEKTYL----------VTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---- 174
Query: 203 PFLDISLLKITPLTGRTHQIRLHLSSVDHRIV---GEGLYGV---ADENAREYLQLKREN 256
+ +++T GR HQ++ ++V + +V E + G+ AD EY L E
Sbjct: 175 -----TQVRLTISEGRYHQVKRXFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 229
Query: 257 NAPLL 261
A ++
Sbjct: 230 IASVV 234
>pdb|1HIB| Interleukin-1 Beta (Human) Mutant With Thr 9 Replaced By Gly (T9g)
Length = 153
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 120 YETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKS------MKIDKPILTPQ 173
YE L L G+ ++ F+Q + + +A GL EK+ +K DKP L +
Sbjct: 24 YELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLE 83
Query: 174 NIQKDLHIRSKI 185
++ + + K+
Sbjct: 84 SVDPKNYPKKKM 95
>pdb|1IOB| Interleukin-1 Beta From Joint X-Ray And Nmr Refinement
pdb|2I1B| Interleukin-1Beta (IL-1Beta)
pdb|1ITB|A Chain A, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
pdb|6I1B| Interleukin-1Beta (NMR, Minimized Average Structure)
pdb|7I1B| Interleukin-1Beta (NMR, 32 Structures)
pdb|4I1B| Interleukin-1Beta (IL-1Beta)
pdb|5I1B| Interleukin 1-Beta
pdb|1I1B| Interleukin-1Beta (IL-1Beta)
pdb|9ILB|A Chain A, Human Interleukin-1 Beta
Length = 153
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 120 YETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKS------MKIDKPILTPQ 173
YE L L G+ ++ F+Q + + +A GL EK+ +K DKP L +
Sbjct: 24 YELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLE 83
Query: 174 NIQKDLHIRSKI 185
++ + + K+
Sbjct: 84 SVDPKNYPKKKM 95
>pdb|41BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 8 Replaced By Ala
(C8A)
Length = 153
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 120 YETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKS------MKIDKPILTPQ 173
YE L L G+ ++ F+Q + + +A GL EK+ +K DKP L +
Sbjct: 24 YELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLE 83
Query: 174 NIQKDLHIRSKI 185
++ + + K+
Sbjct: 84 SVDPKNYPKKKM 95
>pdb|21BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 71 Replaced By Ala)
(C71A)
Length = 153
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 120 YETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKS------MKIDKPILTPQ 173
YE L L G+ ++ F+Q + + +A GL EK+ +K DKP L +
Sbjct: 24 YELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSAVLKDDKPTLQLE 83
Query: 174 NIQKDLHIRSKI 185
++ + + K+
Sbjct: 84 SVDPKNYPKKKM 95
>pdb|31BI| Interleukin-1Beta (IL-1Beta) (Mutant With Cys 71 Replaced By Ser)
(C71S)
Length = 153
Score = 25.8 bits (55), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 120 YETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVEKS------MKIDKPILTPQ 173
YE L L G+ ++ F+Q + + +A GL EK+ +K DKP L +
Sbjct: 24 YELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSSVLKDDKPTLQLE 83
Query: 174 NIQKDLHIRSKI 185
++ + + K+
Sbjct: 84 SVDPKNYPKKKM 95
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,634,726
Number of Sequences: 13198
Number of extensions: 65854
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 6
length of query: 298
length of database: 2,899,336
effective HSP length: 88
effective length of query: 210
effective length of database: 1,737,912
effective search space: 364961520
effective search space used: 364961520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)