BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644977|ref|NP_207147.1| CTP synthetase (pyrG)
[Helicobacter pylori 26695]
(538 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amid... 27 4.4
pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneli... 27 4.4
pdb|1VPE| Crystallographic Analysis Of Phosphoglycerate K... 27 5.7
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 27 5.7
pdb|1BWW|A Chain A, Bence-Jones Immunoglobulin Rei Variable... 27 5.7
pdb|1JWK|A Chain A, Murine Inducible Nitric Oxide Synthase ... 27 5.7
pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complex... 27 5.7
pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric... 27 5.7
pdb|1DD7|A Chain A, Murine Inducible Nitric Oxide Synthase ... 27 7.5
pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescen... 27 7.5
pdb|1DF1|A Chain A, Murine Inosoxy Dimer With Isothiourea B... 27 7.5
pdb|1M8E|A Chain A, Inducible Nitric Oxide Synthase With 7-... 27 7.5
pdb|1DWV|A Chain A, Murine Inducible Nitric Oxide Synthase ... 27 7.5
pdb|1NOC|A Chain A, Murine Inducible Nitric Oxide Synthase ... 27 7.5
pdb|1QOM|A Chain A, Murine Inducible Nitric Oxide Synthase ... 27 7.5
pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small S... 26 9.8
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Esc... 26 9.8
pdb|1JWJ|A Chain A, Murine Inducible Nitric Oxide Synthase ... 26 9.8
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 27.3 bits (59), Expect = 4.4
Identities = 29/89 (32%), Positives = 41/89 (45%), Gaps = 18/89 (20%)
Query: 331 SENFNE---------KTDLEGVDAILVPG--GFGE---RGIEGKICAIQRARLEKLPFL- 375
SENF + + DL D + +PG FGE R E + R +E ++
Sbjct: 26 SENFEDVSIELVESPRNDL--YDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVV 83
Query: 376 GICLGMQLAIVEFCRNVLGLKGANSTEFN 404
G+CLGMQL + E G+KG + E N
Sbjct: 84 GVCLGMQL-LFEESEEAPGVKGLSLIEGN 111
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 27.3 bits (59), Expect = 4.4
Identities = 29/89 (32%), Positives = 41/89 (45%), Gaps = 18/89 (20%)
Query: 331 SENFNE---------KTDLEGVDAILVPG--GFGE---RGIEGKICAIQRARLEKLPFL- 375
SENF + + DL D + +PG FGE R E + R +E ++
Sbjct: 24 SENFEDVSIELVESPRNDL--YDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVV 81
Query: 376 GICLGMQLAIVEFCRNVLGLKGANSTEFN 404
G+CLGMQL + E G+KG + E N
Sbjct: 82 GVCLGMQL-LFEESEEAPGVKGLSLIEGN 109
>pdb|1VPE| Crystallographic Analysis Of Phosphoglycerate Kinase From The
Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 26.9 bits (58), Expect = 5.7
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 2/46 (4%)
Query: 97 FSSVIENERKGEYLGKTIQIVPHVT-DEIKRRIKSAAKGLDFLIVE 141
FS +R E LGK ++ VP V DE+K+ ++ +G + L++E
Sbjct: 70 FSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEG-EVLLLE 114
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 26.9 bits (58), Expect = 5.7
Identities = 11/49 (22%), Positives = 26/49 (52%)
Query: 80 FLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRI 128
F++R +++ T + ++ + + + K +Q P + DEI+RR+
Sbjct: 84 FVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRM 132
>pdb|1BWW|A Chain A, Bence-Jones Immunoglobulin Rei Variable Portion, T39k
Mutant
pdb|1BWW|B Chain B, Bence-Jones Immunoglobulin Rei Variable Portion, T39k
Mutant
Length = 109
Score = 26.9 bits (58), Expect = 5.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 205 TPQIILARSPKPLDKELKNKIALSCDVEQDSV 236
TP I + +SP L + +++ ++C QD +
Sbjct: 1 TPDIQMTQSPSSLSASVGDRVTITCQASQDII 32
>pdb|1JWK|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
pdb|1JWK|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457a Mutation At Tetrahydrobiopterin
Binding Site
Length = 434
Score = 26.9 bits (58), Expect = 5.7
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 342 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIALVPPVSGS 401
Query: 124 I 124
I
Sbjct: 402 I 402
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 26.9 bits (58), Expect = 5.7
Identities = 19/51 (37%), Positives = 22/51 (42%), Gaps = 10/51 (19%)
Query: 480 WENKGLKVVGFGSNHLIEAIELEDHPF---------FVGVQFHPEFTSRLQ 521
W + G KV S+ + A E PF F GVQFHPE T Q
Sbjct: 140 WMSHGDKVTAIPSDFITVA-STESCPFAIMANEEKRFYGVQFHPEVTHTRQ 189
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 26.9 bits (58), Expect = 5.7
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 371 KLPFLGICLGMQLAIVEFCRNVLGLKG 397
KLP +GICLG Q AIVE +G G
Sbjct: 76 KLPIIGICLGHQ-AIVEAYGGYVGQAG 101
>pdb|1DD7|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Domain
(Delta 114) (N-[(1,3-Benzodioxol-5-Yl)methyl]-1-[2-(1h-
Imidazol-1-Yl)pyrimidin-4-Yl]-4-(Methoxycarbonyl)-
Piperazine-2-Acetamide Complex
Length = 389
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 293 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 352
Query: 124 I 124
I
Sbjct: 353 I 353
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 26.6 bits (57), Expect = 7.5
Identities = 21/49 (42%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
Query: 349 PGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKG 397
PG E G ++ +QR R +LP +GICLG Q AIVE +G G
Sbjct: 58 PGTPSEAGCMPEL--LQRLR-GQLPIIGICLGHQ-AIVEAYGGQVGQAG 102
>pdb|1DF1|A Chain A, Murine Inosoxy Dimer With Isothiourea Bound In The Active
Site
pdb|1DF1|B Chain B, Murine Inosoxy Dimer With Isothiourea Bound In The Active
Site
pdb|1NOD|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Substrate
L-Arginine
pdb|2NOD|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Water Bound In
Active Center
pdb|3NOD|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Product Analogue
L-Thiocitrulline
pdb|1NOD|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Substrate
L-Arginine
pdb|2NOD|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Water Bound In
Active Center
pdb|3NOD|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Tetrahydrobiopterin And Product Analogue
L-Thiocitrulline
Length = 423
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 330 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 389
Query: 124 I 124
I
Sbjct: 390 I 390
>pdb|1M8E|A Chain A, Inducible Nitric Oxide Synthase With 7-Nitroindazole Bound
pdb|1M8E|B Chain B, Inducible Nitric Oxide Synthase With 7-Nitroindazole Bound
pdb|1M8H|A Chain A, Inducible Nitric Oxide Synthase With 6-Nitroindazole Bound
pdb|1M8H|B Chain B, Inducible Nitric Oxide Synthase With 6-Nitroindazole Bound
pdb|1M8I|A Chain A, Inducible Nitric Oxide Synthase With 5-Nitroindazole Bound
pdb|1M8I|B Chain B, Inducible Nitric Oxide Synthase With 5-Nitroindazole Bound
pdb|1M8D|A Chain A, Inducible Nitric Oxide Synthase With Chlorzoxazone Bound
pdb|1M8D|B Chain B, Inducible Nitric Oxide Synthase With Chlorzoxazone Bound
pdb|1M9T|A Chain A, Inducible Nitric Oxide Synthase With 3-Bromo-7-
Nitroindazole Bound
pdb|1M9T|B Chain B, Inducible Nitric Oxide Synthase With 3-Bromo-7-
Nitroindazole Bound
Length = 434
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 342 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 401
Query: 124 I 124
I
Sbjct: 402 I 402
>pdb|1DWV|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And 4-Amino Tetrahydrobiopterin
pdb|1DWV|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And 4-Amino Tetrahydrobiopterin
pdb|1DWW|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And Dihydrobiopterin
pdb|1DWW|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And Dihydrobiopterin
pdb|1DWX|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And Tetrahydrobiopterin
pdb|1DWX|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
N-Hydroxyarginine And Tetrahydrobiopterin
Length = 420
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 330 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 389
Query: 124 I 124
I
Sbjct: 390 I 390
>pdb|1NOC|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Domain
(Delta 114) Complexed With Type I E. Coli
Chloramphenicol Acetyl Transferase And Imidazole
pdb|2NOS| Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta
114), Aminoguanidine Complex
pdb|1NOS| Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta
114), Imidazole Complex
Length = 388
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 292 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 351
Query: 124 I 124
I
Sbjct: 352 I 352
>pdb|1QOM|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Swapped N-Terminal Hook
pdb|1QOM|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Swapped N-Terminal Hook
Length = 440
Score = 26.6 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 342 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIWLVPPVSGS 401
Query: 124 I 124
I
Sbjct: 402 I 402
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 26.2 bits (56), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 344 DAILVPGGFGERG-IEGKICAIQRARLEKLPFLGICLGMQL 383
D I + G G+ + I AIQ+ +P GICLG QL
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQL 274
>pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
Length = 382
Score = 26.2 bits (56), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 344 DAILVPGGFGERG-IEGKICAIQRARLEKLPFLGICLGMQL 383
D I + G G+ + I AIQ+ +P GICLG QL
Sbjct: 234 DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQL 274
>pdb|1JWJ|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457f Mutation At Tetrahydrobiopterin
Binding Site
pdb|1JWJ|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With W457f Mutation At Tetrahydrobiopterin
Binding Site
Length = 433
Score = 26.2 bits (56), Expect = 9.8
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 66 DGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENE--RKGEYLGKTIQIVPHVTDE 123
D A T++++ F +N+T +++ T + F ++NE +G I +VP V+
Sbjct: 341 DRAVTEINVAVLHSFQKQNVTIMDHHTASESFMKHMQNEYRARGGCPADWIFLVPPVSGS 400
Query: 124 I 124
I
Sbjct: 401 I 401
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,142,035
Number of Sequences: 13198
Number of extensions: 136471
Number of successful extensions: 397
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 18
length of query: 538
length of database: 2,899,336
effective HSP length: 93
effective length of query: 445
effective length of database: 1,671,922
effective search space: 744005290
effective search space used: 744005290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)