BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644980|ref|NP_207150.1| flagellar motor switch
protein (fliG) [Helicobacter pylori 26695]
(343 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 171 8e-44
pdb|1QC7|A Chain A, T. Maritima Flig C-Terminal Domain >gi|... 92 1e-19
pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Char... 29 0.68
pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 29 0.68
pdb|1C50|A Chain A, Identification And Structural Character... 29 0.68
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glyc... 29 0.68
pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphoryl... 29 0.68
pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 29 0.68
pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Co... 29 0.68
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 28 1.5
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 28 1.5
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 28 1.5
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 27 2.6
pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From... 27 2.6
pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis ... 27 3.4
pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F3... 27 3.4
pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent ... 27 4.4
pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structu... 26 5.8
pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of... 26 7.5
pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bo... 26 7.5
pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I >gi|67... 26 7.5
pdb|1TAQ| Structure Of Taq Dna Polymerase 26 7.5
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of... 26 7.5
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 26 7.5
pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragm... 26 7.5
pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clo... 26 7.5
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 26 7.5
pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of... 26 7.5
pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F3... 25 9.8
pdb|1I78|A Chain A, Crystal Structure Of Outer Membrane Pro... 25 9.8
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 171 bits (434), Expect = 8e-44
Identities = 92/229 (40%), Positives = 148/229 (64%), Gaps = 3/229 (1%)
Query: 117 KNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANL 176
K F+++ P QL +F+ +EHPQTIA++L++++ P AA+ L P+E++ E+ R+A L
Sbjct: 3 KPFSFVRDTDPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALL 62
Query: 177 GEISPQVVKRVSTVLENKLESLTSYKI-EVGGLRAVAEIFNRLGQKSAKTTLARIESVDN 235
SP+VVK + LE K+ S +VGG+ AEI N L + + K + ++ +
Sbjct: 63 ERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENP 122
Query: 236 KLAGAIKEMMFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAA 295
+LA I+ MF FEDI+KLD+ +I+ +L+ D +DL+LALK ++ +L +K NMS RAA
Sbjct: 123 ELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAA 182
Query: 296 EQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342
+E++Y+G V++KDV+ AQ+KII I++ L+E G VI G E++I
Sbjct: 183 ALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEIVIARGGGEELI 231
Score = 49.3 bits (116), Expect = 6e-07
Identities = 48/202 (23%), Positives = 92/202 (44%), Gaps = 20/202 (9%)
Query: 7 PKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAA 66
P Q + + IA++L + +IL L + TE+ K+I L T ++
Sbjct: 13 PVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKE 72
Query: 67 V---LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLG 123
+ LE+ + F S + GG++ A E++ L KK+MDKL Q+N
Sbjct: 73 IERNLEKKISGFVSRTFSKVGGIDTAAEIM-NNLDRTTEKKIMDKL-----VQENPELAD 126
Query: 124 KIKPQQLA-DFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQ 182
+I+ + + I+ ++I L+L ++ + A L DE+K +I M+
Sbjct: 127 EIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMS-------- 178
Query: 183 VVKRVSTVLENKLESLTSYKIE 204
KR + +L+++LE + +++
Sbjct: 179 --KRAAALLKDELEYMGPVRLK 198
>pdb|1QC7|A Chain A, T. Maritima Flig C-Terminal Domain
pdb|1QC7|B Chain B, T. Maritima Flig C-Terminal Domain
Length = 101
Score = 91.7 bits (226), Expect = 1e-19
Identities = 47/100 (47%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
Query: 245 MFTFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQY 304
MF FEDI+KLD+ +I+ +L+ D +DL+LALK ++ +L +K NMS RAA +E++Y
Sbjct: 1 MFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEY 60
Query: 305 LGAVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342
+G V++KDV+ AQ+KII I++ L+E G VI G E++I
Sbjct: 61 MGPVRLKDVEEAQQKIINIIRRLEEAGEIVIARGGGEELI 100
>pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1GPY| Glycogen Phosphorylase B (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-6-Phosphate
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1PYG|A Chain A, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|C Chain C, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|D Chain D, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|B Chain B, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
Length = 842
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 522 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 581
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 582 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 641
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 642 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 701
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 702 EAGEENFFIFGMRVEDVD 719
>pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Methylene-Phosphate And Maltohexaose
pdb|3GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Phosphate
pdb|4GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
2-Fluoro-2-Deoxy-Alpha-D-Glucose-1-Phosphate
pdb|2GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-Monophosphate
pdb|6GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Heptulose 2-Phosphate And Maltoheptaose And AMP
pdb|1GPA|A Chain A, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|C Chain C, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|D Chain D, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|B Chain B, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|7GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|9GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|1GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State)
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
Length = 842
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 522 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 581
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 582 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 641
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 642 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 701
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 702 EAGEENFFIFGMRVEDVD 719
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 510 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 569
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 570 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 629
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 630 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 689
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 690 EAGEENFFIFGMRVEDVD 707
>pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
Length = 842
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 522 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 581
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 582 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 641
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 642 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 701
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 702 EAGEENFFIFGMRVEDVD 719
>pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN| 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
Length = 842
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 522 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 581
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 582 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 641
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 642 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMXFMLNGALTIGTMDGANVEMAE 701
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 702 EAGEENFFIFGMRVEDVD 719
>pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With AMP
Length = 832
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 512 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 571
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 572 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 631
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 632 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 691
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 692 EAGEENFFIFGMRVEDVD 709
>pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|B Chain B, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|C Chain C, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|D Chain D, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
Length = 828
Score = 29.3 bits (64), Expect = 0.68
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 158 LSYFPDE--------MKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLR 209
LSY DE +K E ++ A E +V +++ + +++ + YK ++
Sbjct: 513 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 572
Query: 210 AVAEIFNRLGQKSAKTTLARIESVDNK------LAGAIKEMMFTFEDIVK---------- 253
V ++NR+ ++ K + R + K +A I +++ D+V
Sbjct: 573 HVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLR 632
Query: 254 ---LDNFAIREILKVADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAE 296
L+N+ + KV DLS + T+ + LT ++ + AE
Sbjct: 633 VIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAE 692
Query: 297 QFVEEMQYLGAVKIKDVD 314
+ EE ++ ++++DVD
Sbjct: 693 EAGEENFFIFGMRVEDVD 710
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.1 bits (61), Expect = 1.5
Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 164 EMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSA 223
++K E ++ + E +V S++ + +++ + YK ++ V ++NR+ +
Sbjct: 536 KVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPK 595
Query: 224 KTTLARIESVDNK------LAGAIKEMMFTFEDIVK-------------LDNFAIREILK 264
K + R + K +A I +++ + D+V L+N+ + K
Sbjct: 596 KLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEK 655
Query: 265 VADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAEQFVEEMQYLGAVKI 310
V DLS + T+ + LT ++ + AE+ EE ++ ++I
Sbjct: 656 VIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRI 715
Query: 311 KDVDVAQRK 319
DV +K
Sbjct: 716 DDVAALDKK 724
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 28.1 bits (61), Expect = 1.5
Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 164 EMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSA 223
++K E ++ + E +V S++ + +++ + YK ++ V ++NR+ +
Sbjct: 537 KVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPK 596
Query: 224 KTTLARIESVDNK------LAGAIKEMMFTFEDIVK-------------LDNFAIREILK 264
K + R + K +A I +++ + D+V L+N+ + K
Sbjct: 597 KLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEK 656
Query: 265 VADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAEQFVEEMQYLGAVKI 310
V DLS + T+ + LT ++ + AE+ EE ++ ++I
Sbjct: 657 VIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRI 716
Query: 311 KDVDVAQRK 319
DV +K
Sbjct: 717 DDVAALDKK 725
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 28.1 bits (61), Expect = 1.5
Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 164 EMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSA 223
++K E ++ + E +V S++ + +++ + YK ++ V ++NR+ +
Sbjct: 536 KVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPK 595
Query: 224 KTTLARIESVDNK------LAGAIKEMMFTFEDIVK-------------LDNFAIREILK 264
K + R + K +A I +++ + D+V L+N+ + K
Sbjct: 596 KLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEK 655
Query: 265 VADKKDLSLALKTSTKD--------------LTDKFLNNMSSRAAEQFVEEMQYLGAVKI 310
V DLS + T+ + LT ++ + AE+ EE ++ ++I
Sbjct: 656 VIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRI 715
Query: 311 KDVDVAQRK 319
DV +K
Sbjct: 716 DDVAALDKK 724
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 27.3 bits (59), Expect = 2.6
Identities = 27/118 (22%), Positives = 48/118 (39%), Gaps = 7/118 (5%)
Query: 156 ETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGG----LRAV 211
+ LS F ++ IS E Q + V E ++ + E L+A
Sbjct: 52 QQLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAA 111
Query: 212 AEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKLDNFAIREILKVADKK 269
+ + QK AK + +E + KLA IK+ ++D VK +++ + A K+
Sbjct: 112 VQTTVQESQKLAKEVASNMEETNKKLAPKIKQ---AYDDFVKHAEEVQKKLHEAATKQ 166
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/83 (21%), Positives = 37/83 (43%), Gaps = 2/83 (2%)
Query: 219 GQKSAKTTLARIESVDNKLAGAI--KEMMFTFEDIVKLDNFAIREILKVADKKDLSLALK 276
G++ A+ + I D + A I K + + D+V + I+ LKV +KD + +
Sbjct: 149 GEEFAEGPILMISYADEEGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLIT 208
Query: 277 TSTKDLTDKFLNNMSSRAAEQFV 299
+ + +L S + +F+
Sbjct: 209 YNGDNFDFAYLKKRSEKLGVKFI 231
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 26.9 bits (58), Expect = 3.4
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 104 KVMDKLTKSLQTQKNFAYLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPD 163
+V +KL ++ ++N +L K K + +AD HP I + M + E L D
Sbjct: 31 EVEEKLNRNFSPEENVQWLAKQKAKAVADL----HPHAIVIGADTMVCLD-GECLGKPQD 85
Query: 164 EMKAEISIRMANLGEISPQVVKRVSTVLENKLES 197
+ +A +R L S V+ VS EN E+
Sbjct: 86 QEEAASMLR--RLSGRSHSVITAVSIQAENHSET 117
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 509
Score = 26.9 bits (58), Expect = 3.4
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 96 TLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFI------INEHPQTIALILAHM 149
+L + A KV D + Q Q A L +++ Q A+ + ++++P A +
Sbjct: 267 SLSHKNADKVQDPYSLRCQPQVMGACLTQLR--QAAEVLGIEANAVSDNPLVFAAEGDVI 324
Query: 150 EAPNA-AETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGL 208
NA AE ++ D + ++ +A +G +S +R+S +++ + L + +E GG+
Sbjct: 325 SGGNAHAEPVAMAADNL----ALAIAEIGSLSE---RRISLMMDKHMSQLPPFLVENGGV 377
Query: 209 RA---VAEIFNRLGQKSAKTTLARIESVDNKLAGAIKE 243
+ +A++ S L+ SVD+ A +E
Sbjct: 378 NSGFMIAQV-TAAALASENKALSHPHSVDSLPTSANQE 414
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-Dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
Length = 555
Score = 26.6 bits (57), Expect = 4.4
Identities = 30/135 (22%), Positives = 54/135 (39%), Gaps = 15/135 (11%)
Query: 53 IVQLNGTDKQIGAAVLEEFFAIFQSNQYI----NTGGLEYARELLTRTLGSEEAKKVMDK 108
I+ + G D AA+L E+F N + T + + + + G + A K+ +
Sbjct: 170 IIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSE 229
Query: 109 LTKSL-----QTQKNFAY---LGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSY 160
L +L T+K + + +G+ + + HP + + E +TLS
Sbjct: 230 LIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPN---ICIVSEEVLAKKKTLSE 286
Query: 161 FPDEMKAEISIRMAN 175
DEM + I R N
Sbjct: 287 IIDEMVSVILKRSLN 301
>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The
Saccharomyces Cerevisiae Ran-Binding Protein Mog1p
Length = 189
Score = 26.2 bits (56), Expect = 5.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 248 FEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTD 284
FED + + I ++L+ DK DL A + +DLT+
Sbjct: 48 FEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTE 84
>pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 96 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 152
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 153 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 207
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 208 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 249
>pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
pdb|1KTQ| Dna Polymerase
Length = 543
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 99 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 155
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 156 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 210
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 211 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 252
>pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I
pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 540
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 96 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 152
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 153 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 207
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 208 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 249
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 388 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 444
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 445 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 499
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 500 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 541
>pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 96 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 152
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 153 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 207
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 208 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 249
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 388 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 444
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 445 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 499
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 500 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 541
>pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 94 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 150
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 151 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 205
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 206 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 247
>pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1GYG|B Chain B, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1CA1| Alpha-Toxin From Clostridium Perfringens
Length = 370
Score = 25.8 bits (55), Expect = 7.5
Identities = 14/51 (27%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
Query: 40 HLDIDSITEISKQIVQLNGTDKQIGAAVLEEFFAIFQSNQYINTGGLEYAR 90
H+ ++ E K+ ++N +G E+F+A N+ N EYAR
Sbjct: 148 HVKFETFAEERKEQYKIN----TVGCKTNEDFYADILKNKDFNAWSKEYAR 194
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 388 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 444
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 445 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 499
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 500 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 541
>pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 25.8 bits (55), Expect = 7.5
Identities = 35/167 (20%), Positives = 78/167 (45%), Gaps = 16/167 (9%)
Query: 91 ELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYL-GKIKPQQLADFIINEHPQTIALILAHM 149
E + R G E ++ ++ S ++ FA L G+++ ++ ++ E + ++ +LAHM
Sbjct: 95 EGVARRYGGEWTEEAGERAALS---ERLFANLWGRLEGEERLLWLYREVERPLSAVLAHM 151
Query: 150 EAPNAAETLSYFPDEMKAEISIRMA-NLGEISPQVVKRVSTVLE-NKLESLTSYKIEVGG 207
EA ++Y +S+ +A + + +V + N + L + G
Sbjct: 152 EATGVRLDVAYL-----RALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELG 206
Query: 208 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIVKL 254
L A+ + + G++S T+ A +E++ + A I E + + ++ KL
Sbjct: 207 LPAIGKT-EKTGKRS--TSAAVLEAL--REAHPIVEKILQYRELTKL 248
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 25.4 bits (54), Expect = 9.8
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 96 TLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKPQQLADFI------INEHPQTIALILAHM 149
+L + A KV D + Q Q A L +++ Q A+ + ++++P A +
Sbjct: 267 SLSHKNADKVQDPYSLRCQPQVMGACLTQLR--QAAEVLGIEANAVSDNPLVFAAEGDVI 324
Query: 150 EAPNA-AETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGL 208
N AE ++ D + ++ +A +G +S +R+S +++ + L + +E GG+
Sbjct: 325 SGGNGHAEPVAMAADNL----ALAIAEIGSLSE---RRISLMMDKHMSQLPPFLVENGGV 377
Query: 209 RA---VAEIFNRLGQKSAKTTLARIESVDNKLAGAIKE 243
+ +A++ S L+ SVD+ A +E
Sbjct: 378 NSGFMIAQV-TAAALASENKALSHPHSVDSLPTSANQE 414
>pdb|1I78|A Chain A, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
pdb|1I78|B Chain B, Crystal Structure Of Outer Membrane Protease Ompt From
Escherichia Coli
Length = 297
Score = 25.4 bits (54), Expect = 9.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 154 AAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187
+ ETLS+ PD + A+IS LG +S + +RV
Sbjct: 1 STETLSFTPDNINADIS-----LGTLSGKTKERV 29
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.132 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,592,297
Number of Sequences: 13198
Number of extensions: 58938
Number of successful extensions: 180
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 32
length of query: 343
length of database: 2,899,336
effective HSP length: 89
effective length of query: 254
effective length of database: 1,724,714
effective search space: 438077356
effective search space used: 438077356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)