BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644668|ref|NP_206837.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(97 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 28 0.12
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 28 0.12
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 28 0.16
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 28 0.21
pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With ... 27 0.36
pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium L... 27 0.36
pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magne... 27 0.36
pdb|1GFQ| Ompf Porin (Mutant R82c) 26 0.61
pdb|1HXU|A Chain A, Ompf Porin Mutant Kk 26 0.61
pdb|1HXT|A Chain A, Ompf Porin Mutant Nqaaa 26 0.61
pdb|1GFP| Ompf Porin (Mutant R42c) 26 0.61
pdb|1GFN| Ompf Porin Deletion (Mutant Delta 109-114) 26 0.61
pdb|2OMF| Ompf Porin >gi|999982|pdb|1OPF| The Structure ... 26 0.61
pdb|1GFO| Ompf Porin (Mutant R132p) 26 0.61
pdb|1GFM| Ompf Porin (Mutant D113g) 26 0.61
pdb|1MPF| Matrix Porin (Ompf) Mutant With Gly 119 Replace... 26 0.61
pdb|1HXX|A Chain A, Ompf Porin Mutant Y106f 26 0.61
pdb|1BT9|A Chain A, Ompf Porin Mutant D74a 26 0.61
pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) Fro... 24 2.3
pdb|1IDS|A Chain A, Iron-Dependent Superoxide Dismutase (E.... 23 4.0
pdb|1AA3| C-Terminal Domain Of The E. Coli Reca, Nmr, Min... 23 4.0
pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy... 23 4.0
pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculo... 23 4.0
pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculo... 23 4.0
pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas M... 23 4.0
pdb|2REB| The Structure Of The E. Coli Reca Protein Monom... 23 4.0
pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase 23 4.0
pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculo... 23 4.0
pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dis... 23 4.0
pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution 23 5.2
pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherich... 23 6.8
pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens 23 6.8
pdb|1MJC| Major Cold Shock Protein 7.4 (Cspa (Cs 7.4)) Of... 23 6.8
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding
Protein 2a From Methicillin Resistant Staphylococcus
Aureus Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding
Protein 2a From Methicillin Resistant Staphylococcus
Aureus Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 28.5 bits (62), Expect = 0.12
Identities = 20/82 (24%), Positives = 38/82 (45%), Gaps = 5/82 (6%)
Query: 20 LEEKN-----KDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALND 74
+E+KN KD+ + SKS G V ++ + L + D ++D++ ++ D
Sbjct: 15 IEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVD 74
Query: 75 GYKAVEENRKNLAFNMLGNFAK 96
++ N N+ N+ NF K
Sbjct: 75 AQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 28.5 bits (62), Expect = 0.12
Identities = 20/82 (24%), Positives = 38/82 (45%), Gaps = 5/82 (6%)
Query: 20 LEEKN-----KDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALND 74
+E+KN KD+ + SKS G V ++ + L + D ++D++ ++ D
Sbjct: 15 IEDKNFKQVYKDSSYISKSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVD 74
Query: 75 GYKAVEENRKNLAFNMLGNFAK 96
++ N N+ N+ NF K
Sbjct: 75 AQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 28.1 bits (61), Expect = 0.16
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 4/87 (4%)
Query: 5 QLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDD----SLLED 60
+L ++ K F++LE+ D SG G + + G+ E D + LED
Sbjct: 383 ELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELED 442
Query: 61 KEAMQIYLMSALNDGYKAVEENRKNLA 87
E Q+ ++ + + + N+ N+A
Sbjct: 443 IEYKQVRGLNGIKEAEVEINNNKYNVA 469
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 27.7 bits (60), Expect = 0.21
Identities = 20/82 (24%), Positives = 37/82 (44%), Gaps = 5/82 (6%)
Query: 20 LEEKN-----KDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALND 74
+E+KN KD+ + SKS G V + + L + D ++D++ ++ D
Sbjct: 15 IEDKNFKQVYKDSSYISKSDNGEVEXTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVD 74
Query: 75 GYKAVEENRKNLAFNMLGNFAK 96
++ N N+ N+ NF K
Sbjct: 75 AQYKIKTNYGNIDRNVQFNFVK 96
>pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With Phosphate And
Calcium Ions
pdb|1CVM|A Chain A, Cadmium Inhibited Crystal Structure Of Phytase From
Bacillus Amyloliquefaciens
Length = 353
Score = 26.9 bits (58), Expect = 0.36
Identities = 16/68 (23%), Positives = 30/68 (43%)
Query: 20 LEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAV 79
LE K + HT K + F G+ VD+ + E K ++IY + N +++
Sbjct: 57 LEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116
Query: 80 EENRKNLA 87
+ + +A
Sbjct: 117 TDPNRPIA 124
>pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium Loaded State
pdb|1POO|A Chain A, Thermostable Phytase From Bacillus Sp
Length = 355
Score = 26.9 bits (58), Expect = 0.36
Identities = 16/68 (23%), Positives = 30/68 (43%)
Query: 20 LEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAV 79
LE K + HT K + F G+ VD+ + E K ++IY + N +++
Sbjct: 57 LEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116
Query: 80 EENRKNLA 87
+ + +A
Sbjct: 117 TDPNRPIA 124
>pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magnesium From Bacillus
Amyloliquefaciens
Length = 355
Score = 26.9 bits (58), Expect = 0.36
Identities = 16/68 (23%), Positives = 30/68 (43%)
Query: 20 LEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAV 79
LE K + HT K + F G+ VD+ + E K ++IY + N +++
Sbjct: 57 LEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116
Query: 80 EENRKNLA 87
+ + +A
Sbjct: 117 TDPNRPIA 124
>pdb|1GFQ| Ompf Porin (Mutant R82c)
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1HXU|A Chain A, Ompf Porin Mutant Kk
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1HXT|A Chain A, Ompf Porin Mutant Nqaaa
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1GFP| Ompf Porin (Mutant R42c)
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1GFN| Ompf Porin Deletion (Mutant Delta 109-114)
Length = 334
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 136 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 180
>pdb|2OMF| Ompf Porin
pdb|1OPF| The Structure Of Ompf Porin In A Tetragonal Crystal Form
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1GFO| Ompf Porin (Mutant R132p)
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1GFM| Ompf Porin (Mutant D113g)
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1MPF| Matrix Porin (Ompf) Mutant With Gly 119 Replaced By Asp (G119d)
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1HXX|A Chain A, Ompf Porin Mutant Y106f
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1BT9|A Chain A, Ompf Porin Mutant D74a
Length = 340
Score = 26.2 bits (56), Expect = 0.61
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 SQLGGLLDGMKKEFSQLEEKNKDTIHTSKSG--GGMVSVSFNGLG 46
S GL+DG+ L + +DT S GG +S + G G
Sbjct: 142 SNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFG 186
>pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) From Human
pdb|1LJR|B Chain B, Glutathione Transferase (Hgst T2-2) From Human
pdb|2LJR|A Chain A, Glutathione Transferase Apo-Form From Human
pdb|2LJR|B Chain B, Glutathione Transferase Apo-Form From Human
pdb|3LJR|A Chain A, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
pdb|3LJR|B Chain B, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
Length = 244
Score = 24.3 bits (51), Expect = 2.3
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 8/58 (13%)
Query: 14 KKEFSQLEEKNKDTI---HTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYL 68
KK LE + D + H SK + N LG+L L+ D +L + A+ IYL
Sbjct: 22 KKNGIPLELRTVDLVKGQHKSKE-----FLQINSLGKLPTLKDGDFILTESSAILIYL 74
>pdb|1IDS|A Chain A, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|B Chain B, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|C Chain C, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
pdb|1IDS|D Chain D, Iron-Dependent Superoxide Dismutase (E.C.1.15.1.1)
(Fe-Superoxide Dismutase, Fe-Sod)
Length = 207
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 DGYKAVEENRKNLAFNMLGN 93
+ + A+ N KNLAFN+ G+
Sbjct: 54 EDHSAILLNEKNLAFNLAGH 73
>pdb|1AA3| C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized Average
Structure
Length = 63
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 43 NGLGELVDLQIDDSLLEDKEAMQIYLMSALNDG 75
N GELVDL + + L+E A Y + G
Sbjct: 2 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 34
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 43 NGLGELVDLQIDDSLLEDKEAMQIYLMSALNDG 75
N GELVDL + + L+E A Y + G
Sbjct: 270 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase
Length = 207
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 DGYKAVEENRKNLAFNMLGN 93
+ + A+ N KNLAFN+ G+
Sbjct: 54 EDHSAILLNEKNLAFNLAGH 73
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase
Length = 207
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 DGYKAVEENRKNLAFNMLGN 93
+ + A+ N KNLAFN+ G+
Sbjct: 54 EDHSAILLNEKNLAFNLAGH 73
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 50 DLQIDDSLLEDKEAMQIYLMSALNDGYKA 78
+L + D+LL +K Q+Y + LN G+ A
Sbjct: 29 NLVLLDNLLLNKNMEQVYCCNELNCGFSA 57
>pdb|2REB| The Structure Of The E. Coli Reca Protein Monomer And Polymer
pdb|1REA| Structure Of The Reca Protein-Adp Complex
Length = 352
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 43 NGLGELVDLQIDDSLLEDKEAMQIYLMSALNDG 75
N GELVDL + + L+E A Y + G
Sbjct: 269 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 301
>pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 23.5 bits (49), Expect = 4.0
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Query: 14 KKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKE 62
K +LEE+ K S G +++V+ + +L DL +D+ LEDK+
Sbjct: 126 KHREQELEERRKLYQWGSWKEGLILNVAGS---KLTDLPVDERFLEDKK 171
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis
Iron-Superoxide Dismutase
Length = 207
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 DGYKAVEENRKNLAFNMLGN 93
+ + A+ N KNLAFN+ G+
Sbjct: 54 EDHSAILLNEKNLAFNLAGH 73
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 23.5 bits (49), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 DGYKAVEENRKNLAFNMLGN 93
+ + A+ N KNLAFN+ G+
Sbjct: 54 EDHSAILLNEKNLAFNLAGH 73
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 23.1 bits (48), Expect = 5.2
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Query: 1 MDFSQLGGLLDGMKKEFSQL-EEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQ 52
+D Q GG ++E +L EEK TS G V+ F G+GE + L+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>pdb|3MEF|A Chain A, Major Cold-Shock Protein From Escherichia Coli Solution
Nmr Structure
Length = 69
Score = 22.7 bits (47), Expect = 6.8
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 66 IYLMSALNDGYKAVEENRK 84
++ + NDGYK+++E +K
Sbjct: 31 VHFSAIQNDGYKSLDEGQK 49
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 22.7 bits (47), Expect = 6.8
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 12 GMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELV 49
G++ E + KNK K+ G+V V N G+L+
Sbjct: 46 GIRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLI 83
>pdb|1MJC| Major Cold Shock Protein 7.4 (Cspa (Cs 7.4)) Of (Escherichia
Coli)
Length = 69
Score = 22.7 bits (47), Expect = 6.8
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 66 IYLMSALNDGYKAVEENRK 84
++ + NDGYK+++E +K
Sbjct: 31 VHFSAIQNDGYKSLDEGQK 49
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.134 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,523
Number of Sequences: 13198
Number of extensions: 18414
Number of successful extensions: 63
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 34
length of query: 97
length of database: 2,899,336
effective HSP length: 73
effective length of query: 24
effective length of database: 1,935,882
effective search space: 46461168
effective search space used: 46461168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)