BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644983|ref|NP_207153.1| GTP-binding membrane
protein (lepA) [Helicobacter pylori 26695]
(602 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 90 6e-19
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 90 6e-19
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 90 6e-19
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 73 8e-14
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 62 1e-10
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 62 1e-10
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 62 2e-10
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 61 3e-10
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 59 1e-09
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 59 1e-09
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 59 1e-09
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 59 1e-09
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 57 4e-09
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 56 1e-08
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 53 1e-07
pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRN... 52 1e-07
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 51 3e-07
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 50 5e-07
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 50 5e-07
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 49 1e-06
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 47 8e-06
pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiati... 46 1e-05
pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced B... 35 0.018
pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Str... 31 0.45
pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation F... 30 0.77
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus... 29 1.7
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 27 5.0
pdb|1JKW| Structure Of Cyclin Mcs2 27 8.5
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 90.1 bits (222), Expect = 6e-19
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 1 MKTKAPMKNIRNFSIIAHIDHGKSTLADCLI---SECNAISNREMKSQVMDTMDIEKERG 57
+K + +K +RN I AHID GK+T + ++ + I + MD M+ E+ERG
Sbjct: 3 VKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG 62
Query: 58 ITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQT 117
ITI A T +D+ +N+IDTPGHVDF+ EV RS+ +GA++V D++QGVE Q+
Sbjct: 63 ITITAAVT----TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
Query: 118 IANTYIALDNHLEILPVINKIDLPNANVLEVKQDIEDTIG 157
A + + NK+D A++ V + +++ +G
Sbjct: 119 ETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 68.2 bits (165), Expect = 3e-12
Identities = 73/306 (23%), Positives = 129/306 (41%), Gaps = 49/306 (16%)
Query: 167 SAKARLGIKDLLEKIITTIPAPSG------------------DFNAPLKALIYDSWFDNY 208
SA G++ LL+ ++ +P+P D N PL AL + D Y
Sbjct: 262 SALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPY 321
Query: 209 LGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGL 268
+G L +R+ G++ + + G+K V L + + + L+ G++G V +GL
Sbjct: 322 VGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAV-VGL 380
Query: 269 KSVTDIAVGDTLTDAKNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLND- 327
K + GDTL P +E +P + + P E L +AL +L D
Sbjct: 381 K---ETITGDTLVGEDAP-RVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDP 436
Query: 328 -CALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLT--- 383
++ PE+ + + +G LH+E+I +RL+REF ++ P V Y +T
Sbjct: 437 TFRVSTHPETGQTI-----ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPV 491
Query: 384 DNSIKYVQNPSELPPENCIACIKEP--------FVRATI--ITPSEFLGNLMQLLNNKRG 433
D K+++ + EP FV A + + P E++ + ++G
Sbjct: 492 DVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAV------QKG 545
Query: 434 IQEKME 439
I+E M+
Sbjct: 546 IEEAMQ 551
Score = 35.4 bits (80), Expect = 0.018
Identities = 23/71 (32%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464
I EP +R + TP E++G+++ LN +RG ME ++V+ + +P E + +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAE-MFGYATD 658
Query: 465 LKSCTKGYASF 475
L+S T+G SF
Sbjct: 659 LRSKTQGRGSF 669
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 90.1 bits (222), Expect = 6e-19
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 1 MKTKAPMKNIRNFSIIAHIDHGKSTLADCLI---SECNAISNREMKSQVMDTMDIEKERG 57
+K + +K +RN I AHID GK+T + ++ + I + MD M+ E+ERG
Sbjct: 3 VKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG 62
Query: 58 ITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQT 117
ITI A T +D+ +N+IDTPGHVDF+ EV RS+ +GA++V D++QGVE Q+
Sbjct: 63 ITITAAVT----TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
Query: 118 IANTYIALDNHLEILPVINKIDLPNANVLEVKQDIEDTIG 157
A + + NK+D A++ V + +++ +G
Sbjct: 119 ETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 68.2 bits (165), Expect = 3e-12
Identities = 73/306 (23%), Positives = 129/306 (41%), Gaps = 49/306 (16%)
Query: 167 SAKARLGIKDLLEKIITTIPAPSG------------------DFNAPLKALIYDSWFDNY 208
SA G++ LL+ ++ +P+P D N PL AL + D Y
Sbjct: 262 SALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPY 321
Query: 209 LGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGL 268
+G L +R+ G++ + + G+K V L + + + L+ G++G V +GL
Sbjct: 322 VGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAV-VGL 380
Query: 269 KSVTDIAVGDTLTDAKNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLND- 327
K + GDTL P +E +P + + P E L +AL +L D
Sbjct: 381 K---ETITGDTLVGEDAP-RVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDP 436
Query: 328 -CALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLT--- 383
++ PE+ + + +G LH+E+I +RL+REF ++ P V Y +T
Sbjct: 437 TFRVSTHPETGQTI-----ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPV 491
Query: 384 DNSIKYVQNPSELPPENCIACIKEP--------FVRATI--ITPSEFLGNLMQLLNNKRG 433
D K+++ + EP FV A + + P E++ + ++G
Sbjct: 492 DVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAV------QKG 545
Query: 434 IQEKME 439
I+E M+
Sbjct: 546 IEEAMQ 551
Score = 35.4 bits (80), Expect = 0.018
Identities = 23/71 (32%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464
I EP +R + TP E++G+++ LN +RG ME ++V+ + +P E + +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAE-MFGYATD 658
Query: 465 LKSCTKGYASF 475
L+S T+G SF
Sbjct: 659 LRSKTQGRGSF 669
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 90.1 bits (222), Expect = 6e-19
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 1 MKTKAPMKNIRNFSIIAHIDHGKSTLADCLI---SECNAISNREMKSQVMDTMDIEKERG 57
+K + +K +RN I AHID GK+T + ++ + I + MD M+ E+ERG
Sbjct: 3 VKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG 62
Query: 58 ITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQT 117
ITI A T +D+ +N+IDTPGHVDF+ EV RS+ +GA++V D++QGVE Q+
Sbjct: 63 ITITAAVT----TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS 118
Query: 118 IANTYIALDNHLEILPVINKIDLPNANVLEVKQDIEDTIG 157
A + + NK+D A++ V + +++ +G
Sbjct: 119 ETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 68.2 bits (165), Expect = 3e-12
Identities = 73/306 (23%), Positives = 129/306 (41%), Gaps = 49/306 (16%)
Query: 167 SAKARLGIKDLLEKIITTIPAPSG------------------DFNAPLKALIYDSWFDNY 208
SA G++ LL+ ++ +P+P D N PL AL + D Y
Sbjct: 262 SALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPY 321
Query: 209 LGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGL 268
+G L +R+ G++ + + G+K V L + + + L+ G++G V +GL
Sbjct: 322 VGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAV-VGL 380
Query: 269 KSVTDIAVGDTLTDAKNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLND- 327
K + GDTL P +E +P + + P E L +AL +L D
Sbjct: 381 K---ETITGDTLVGEDAP-RVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDP 436
Query: 328 -CALNFEPESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLT--- 383
++ PE+ + + +G LH+E+I +RL+REF ++ P V Y +T
Sbjct: 437 TFRVSTHPETGQTI-----ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPV 491
Query: 384 DNSIKYVQNPSELPPENCIACIKEP--------FVRATI--ITPSEFLGNLMQLLNNKRG 433
D K+++ + EP FV A + + P E++ + ++G
Sbjct: 492 DVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAV------QKG 545
Query: 434 IQEKME 439
I+E M+
Sbjct: 546 IEEAMQ 551
Score = 35.4 bits (80), Expect = 0.018
Identities = 23/71 (32%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464
I EP +R + TP E++G+++ LN +RG ME ++V+ + +P E + +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAE-MFGYATD 658
Query: 465 LKSCTKGYASF 475
L+S T+G SF
Sbjct: 659 LRSKTQGRGSF 669
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 73.2 bits (178), Expect = 8e-14
Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 49/269 (18%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKSQ----------------VMDTMDIEKE 55
N +I H+DHGKSTL L+ + I + +K ++D + E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 56 RGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQG--- 112
RG+TI +R F+ + Y +ID PGH DF + + A+LVV A +G
Sbjct: 68 RGVTINLTFMR----FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 113 ----VEAQTIANTYIALDNHL-EILPVINKIDL--PNANVLEVKQDIEDTIGIDCS---N 162
VE QT + +A L +++ +NK+DL P + K+ ++ S N
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 163 TNEV----------------SAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFD 206
TN+V S + LE+ + + P + PL+ I D +
Sbjct: 184 TNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI 243
Query: 207 NYLGALALVRIMDGSINTEQEILVMGTGK 235
+ +G + + R+ G + +I+ M GK
Sbjct: 244 SGVGTVPVGRVESGVLKVGDKIVFMPAGK 272
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 62.4 bits (150), Expect = 1e-10
Identities = 67/249 (26%), Positives = 105/249 (41%), Gaps = 32/249 (12%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAIS-NREMKSQV-MDTMDIEKERGITIKAQSVRLNY 69
N I H+DHGK+TL L A + N E+K +D E+ RGITI V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 70 TFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL 129
+ +V D PGH D+ + +GA+LVV A G QT + +A +
Sbjct: 73 AKRHYSHV----DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 130 EILPV-INKIDL-PNANVLE-VKQDIEDTIGIDCSNTNEV----------------SAKA 170
+ V +NK+D+ + +L+ V+ ++ D + +EV + K
Sbjct: 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
Query: 171 RLG-------IKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSIN 223
R G I +LL+ I IP P D + P + D + G +A RI G +
Sbjct: 189 RRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 248
Query: 224 TEQEILVMG 232
E+ ++G
Sbjct: 249 VGDEVEIVG 257
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 62.4 bits (150), Expect = 1e-10
Identities = 67/249 (26%), Positives = 105/249 (41%), Gaps = 32/249 (12%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAIS-NREMKSQV-MDTMDIEKERGITIKAQSVRLNY 69
N I H+DHGK+TL L A + N E+K +D E+ RGITI V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 70 TFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL 129
+ +V D PGH D+ + +GA+LVV A G QT + +A +
Sbjct: 73 AKRHYSHV----DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 130 EILPV-INKIDL-PNANVLE-VKQDIEDTIGIDCSNTNEV----------------SAKA 170
+ V +NK+D+ + +L+ V+ ++ D + +EV + K
Sbjct: 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
Query: 171 RLG-------IKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSIN 223
R G I +LL+ I IP P D + P + D + G +A RI G +
Sbjct: 189 RRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 248
Query: 224 TEQEILVMG 232
E+ ++G
Sbjct: 249 VGDEVEIVG 257
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 61.6 bits (148), Expect = 2e-10
Identities = 66/249 (26%), Positives = 105/249 (41%), Gaps = 32/249 (12%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAIS-NREMKSQV-MDTMDIEKERGITIKAQSVRLNY 69
N I H+DHGK+TL L A + N E+K +D E+ RGITI V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 70 TFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL 129
+ +V D PGH D+ + +GA+LVV A G QT + +A +
Sbjct: 73 AKRHYSHV----DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 130 EILPV-INKIDL-PNANVLE-VKQDIEDTIGIDCSNTNEV----------------SAKA 170
+ V +NK+D+ + +L+ V+ ++ D + +EV + K
Sbjct: 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKT 188
Query: 171 RLG-------IKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSIN 223
+ G I +LL+ I IP P D + P + D + G +A RI G +
Sbjct: 189 KRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 248
Query: 224 TEQEILVMG 232
E+ ++G
Sbjct: 249 VGDEVEIVG 257
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 61.2 bits (147), Expect = 3e-10
Identities = 66/249 (26%), Positives = 105/249 (41%), Gaps = 32/249 (12%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAIS-NREMKSQV-MDTMDIEKERGITIKAQSVRLNY 69
N I H+DHGK+TL L A + N E+K +D E+ RGITI V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 70 TFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL 129
+ +V D PGH D+ + +GA+LVV A G QT + +A +
Sbjct: 73 AKRHYSHV----DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 130 EILPV-INKIDL-PNANVLE-VKQDIEDTIGIDCSNTNEV----------------SAKA 170
+ V +NK+D+ + +L+ V+ ++ D + +EV + K
Sbjct: 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKT 188
Query: 171 RLG-------IKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSIN 223
+ G I +LL+ I IP P D + P + D + G +A RI G +
Sbjct: 189 KRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVK 248
Query: 224 TEQEILVMG 232
E+ ++G
Sbjct: 249 VGDEVEIVG 257
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 59.3 bits (142), Expect = 1e-09
Identities = 77/300 (25%), Positives = 121/300 (39%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + +D EK RGITI V +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 72
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 73 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 126
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 127 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 186
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 187 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 246
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 247 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 300
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 59.3 bits (142), Expect = 1e-09
Identities = 77/300 (25%), Positives = 121/300 (39%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + +D EK RGITI V +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 72
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 73 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 126
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 127 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 186
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 187 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 246
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 247 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 300
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 59.3 bits (142), Expect = 1e-09
Identities = 77/300 (25%), Positives = 121/300 (39%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + +D EK RGITI V +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 64
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 65 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 118
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 119 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 178
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 179 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 238
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 239 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 292
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 59.3 bits (142), Expect = 1e-09
Identities = 77/300 (25%), Positives = 121/300 (39%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + +D EK RGITI V +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 73
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 74 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 127
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 128 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 187
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 188 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 247
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 248 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 301
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 57.4 bits (137), Expect = 4e-09
Identities = 56/203 (27%), Positives = 88/203 (42%), Gaps = 23/203 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKS-QVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + K + +D E+ RGITI A V Y+
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE--YS 62
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHLE 130
Y D PGH D+ + +G +LVV A G QT + +A +E
Sbjct: 63 TAARHYAHT--DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 131 -ILPVINKID-LPNANVLE-VKQDIEDTI---GIDCSNTNEVSAKA---------RLGIK 175
++ +NK D + ++ ++E V+ +I + + G T + A LG+K
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 176 D---LLEKIITTIPAPSGDFNAP 195
LL+ + T IP P+ D P
Sbjct: 181 SVQKLLDAVDTYIPVPTRDLEKP 203
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 55.8 bits (133), Expect = 1e-08
Identities = 79/342 (23%), Positives = 133/342 (38%), Gaps = 71/342 (20%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMK----------------SQVMDTMDIEKE 55
N +I H+D GKST LI +C I R ++ + V+D + E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 56 RGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVV-------D 108
RGITI + F+ Y + +ID PGH DF + + A+L++ +
Sbjct: 69 RGITIDIAL----WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 109 ATQGVEAQTIANTYIALDNHL-EILPVINKIDLPNANVLEVKQDIEDT------------ 155
A + QT + +A + +++ +NK+D + ++ +++T
Sbjct: 125 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK 184
Query: 156 -------IGIDCSNTNEVSAKA----------RLGI---KDLLEKIITTIPAPSGDFNAP 195
G + N E + A + G+ K LLE I I PS + P
Sbjct: 185 TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLE-AIDAIEQPSRPTDKP 243
Query: 196 LKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYYPNPLKKIPTKS 255
L+ + D + +G + + R+ G I + G V + ++ +
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSV-------EMHHEQ 296
Query: 256 LECGEIG-IVSLGLK--SVTDIAVGDTLTDAKNPTSKPIEGF 294
LE G G V +K SV +I G+ DAKN K F
Sbjct: 297 LEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASF 338
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 52.8 bits (125), Expect = 1e-07
Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 42/240 (17%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIK---------- 61
N ++ H+DHGK+TL L DT E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWT------------DTHSEELRRGITIKIGFADAEIRR 59
Query: 62 -------AQSVRLNYTFKGEDYV--LNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQG 112
+ S Y ++V ++ ID PGH + +GA+LV+ A +
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 113 VEAQTIANTYIALD--NHLEILPVINKIDLPN-----ANVLEVKQDIEDTIGIDCSNTNE 165
+AL I+ NKI+L + N ++K+ IE T+ + +
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVA-ENAPIIP 178
Query: 166 VSAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGA---LALVRIMDGSI 222
+SA I L++ I IP P D N P K L+ S+ N G + ++DGSI
Sbjct: 179 ISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSI 238
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND BOSOMAL
Proteins Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-07
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKER-----GITIKAQSVR 66
N I H+DHGK+TL L + A NR + +V D DI+K R GITI V
Sbjct: 13 NVGTIGHVDHGKTTLTAAL-TYVAAAENRNV--EVKDYGDIDKAREERARGITINTAHVE 69
Query: 67 LNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALD 126
+ +V D GH D+ + +GA+LVV A G QT + +A
Sbjct: 70 YETAKRHYSHV----DCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQ 125
Query: 127 NHLEILPV-INKIDL 140
+ + V +NK+D+
Sbjct: 126 VGVRYIVVFMNKVDM 140
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 51.2 bits (121), Expect = 3e-07
Identities = 59/225 (26%), Positives = 88/225 (38%), Gaps = 39/225 (17%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIK---------- 61
N ++ H+DHGK+TL L DT E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWT------------DTHSEELRRGITIKIGFADAEIRR 59
Query: 62 -------AQSVRLNYTFKGEDYV--LNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQG 112
+ S Y ++V ++ ID PGH + +GA+LV+ A +
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 113 VEAQTIANTYIALD--NHLEILPVINKIDLPN-----ANVLEVKQDIEDTIGIDCSNTNE 165
+AL I+ NKI+L + N ++K+ IE T+ + +
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVA-ENAPIIP 178
Query: 166 VSAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLG 210
+SA I L++ I IP P D N P K L+ S+ N G
Sbjct: 179 ISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPG 223
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 50.4 bits (119), Expect = 5e-07
Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + GITI V +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAAXXXXXXXXXXXXXXXGITINTSHVEYDTP 73
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 74 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 127
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 128 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 187
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 188 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 247
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 248 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 301
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 50.4 bits (119), Expect = 5e-07
Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 33/300 (11%)
Query: 12 NFSIIAHIDHGKSTLADCLISE-CNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYT 70
N I H+DHGK+TL + + GITI V +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARXXXXXXXXXXXXXXGITINTSHVEYDTP 72
Query: 71 FKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALDNHL- 129
+ +V D PGH D+ + +GA+LVV AT G QT +I L +
Sbjct: 73 TRHYAHV----DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQVG 126
Query: 130 --EILPVINKIDLPNANVL------EVKQDIE--DTIGIDCSNTNEVSAKARLGIKDLLE 179
I+ +NK D+ + L EV++ + D G D + KA G +
Sbjct: 127 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 186
Query: 180 KII-------TTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMG 232
KI+ + IP P + P I D + + G + R+ G I +E+ ++G
Sbjct: 187 KILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 246
Query: 233 --TGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAKNPTSKP 290
+K G+ +K+ + +G++ G+K +I G L AK T KP
Sbjct: 247 IKETQKSTCTGV---EMFRKLLDEGRAGENVGVLLRGIKR-EEIERGQVL--AKPGTIKP 300
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 49.3 bits (116), Expect = 1e-06
Identities = 59/225 (26%), Positives = 85/225 (37%), Gaps = 39/225 (17%)
Query: 12 NFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIK---------- 61
N + H+DHGK+TL L DT E RGITIK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGVWT------------DTHSEELRRGITIKIGFADAEIRR 59
Query: 62 -------AQSVRLNYTFKGEDYV--LNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQG 112
+ S Y ++V ++ ID PGH +GA+LV+ A +
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEP 119
Query: 113 VEAQTIANTYIALD--NHLEILPVINKIDLPN-----ANVLEVKQDIEDTIGIDCSNTNE 165
AL I+ NKI+L + N ++K+ IE T+ + +
Sbjct: 120 CPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVA-ENAPIIP 178
Query: 166 VSAKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLG 210
+SA I L++ I IP P D N P K L+ S+ N G
Sbjct: 179 ISALHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPG 223
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 46.6 bits (109), Expect = 8e-06
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 1 MKTKAPMKNIRNFSIIAHIDHGKSTLADCLISECNAISNREMKSQVMDT------MD-IE 53
MK ++P+ S++ H+DHGK+TL D + +A+++RE MD IE
Sbjct: 1 MKIRSPI-----VSVLGHVDHGKTTLLDHIRG--SAVASREAGGITQHIGATEIPMDVIE 53
Query: 54 KERGITIKAQSVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGV 113
G +K S+R T G L IDTPGH F+ R + A+L+VD +G
Sbjct: 54 GICGDFLKKFSIR--ETLPG----LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF 107
Query: 114 EAQTIANTYIALDNHLEILPVINKID 139
+ QT I + NKID
Sbjct: 108 KPQTQEALNILRMYRTPFVVAANKID 133
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 45.8 bits (107), Expect = 1e-05
Identities = 41/133 (30%), Positives = 62/133 (45%), Gaps = 15/133 (11%)
Query: 14 SIIAHIDHGKSTLADCLISECNAISNRE-------MKSQVMDTMDIEKERGITIKAQSVR 66
S++ H+DHGK+TL D + +A+++RE + + + IE G +K S+R
Sbjct: 9 SVLGHVDHGKTTLLDHIRG--SAVASREAGGITQHIGATEIPXDVIEGICGDFLKKFSIR 66
Query: 67 LNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALD 126
T G L IDTPGH F+ R + A+L+VD +G + QT I
Sbjct: 67 --ETLPG----LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRX 120
Query: 127 NHLEILPVINKID 139
+ NKID
Sbjct: 121 YRTPFVVAANKID 133
>pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced By His (Q61h)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 35.4 bits (80), Expect = 0.018
Identities = 36/129 (27%), Positives = 60/129 (45%), Gaps = 11/129 (8%)
Query: 64 SVRLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLV--VDATQGVEAQTIANT 121
S R GE +L+++DT GH ++S + + + EG L V ++ T+ E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 122 YIALDNHLEILPVI---NKIDLPNANVLEVK--QDIEDTIGIDCSNTNEVSAKARLGIKD 176
I + +P++ NK DL A +E + QD+ + GI E SAK R G++D
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYI---ETSAKTRQGVED 154
Query: 177 LLEKIITTI 185
++ I
Sbjct: 155 AFYTLVREI 163
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 30.8 bits (68), Expect = 0.45
Identities = 22/72 (30%), Positives = 32/72 (43%), Gaps = 10/72 (13%)
Query: 20 DHGKSTLADCLISECNAISNREMKSQVMDTMDIEKERGITIKAQSVRLNYTFKGEDYVLN 79
DHG + + C+A R ++DT + E+G I + V LN Y +
Sbjct: 208 DHGPAVI------HCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLNM----RKYRMG 257
Query: 80 LIDTPGHVDFSY 91
LI TP + FSY
Sbjct: 258 LIQTPDQLRFSY 269
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 30.0 bits (66), Expect = 0.77
Identities = 20/66 (30%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Query: 410 VRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCT 469
+R + TP E++G+++ LN +RG ME ++V+ + +P E + + L+S T
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAE-MFGYATDLRSKT 58
Query: 470 KGYASF 475
+G SF
Sbjct: 59 QGRGSF 64
>pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
Length = 686
Score = 28.9 bits (63), Expect = 1.7
Identities = 21/79 (26%), Positives = 34/79 (42%), Gaps = 8/79 (10%)
Query: 433 GIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTK----GYASFDYEPIENREANLV 488
G+++K+ YL Q V + P V+D D L GY + D++ IE N
Sbjct: 53 GVRQKLPYLKQLGVTTIWLSP----VLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWT 108
Query: 489 KLDVRVAGDVVDALSIIID 507
D V + + +I+D
Sbjct: 109 TFDTLVNDAHQNGIKVIVD 127
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 27.3 bits (59), Expect = 5.0
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 361 LEREFGLNLIATAPTVVYEVHLTDNSIKY--VQNPSELPPENCIACIKEPFVRATII-TP 417
L ++ +LI P +E L D +Y ++NP L + A ++ TP
Sbjct: 160 LIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTP 219
Query: 418 SEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDY 477
S+ + ++ GI + YL++S +ML + ++D +++ K Y
Sbjct: 220 SQIALTAILSSASRAGITME-SYLSES-LMLKENRTCLSQLLDIMKSMRNLVK-----KY 272
Query: 478 EPIENREANLVKLDVRVAGDVVDALSIIIDKNKAYE 513
EP + E ++K + AL++I K K YE
Sbjct: 273 EPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYE 308
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 26.6 bits (57), Expect = 8.5
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 361 LEREFGLNLIATAPTVVYEVHLTDNSIKY--VQNPSELPPENCIACIKEPFVRATII-TP 417
L ++ +LI P +E L D +Y ++NP L + A ++ TP
Sbjct: 150 LIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTP 209
Query: 418 SEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKLKSCTKGYASFDY 477
S+ + ++ GI + YL++S +ML + ++D +++ K Y
Sbjct: 210 SQIALTAILSSASRAGITME-SYLSES-LMLKENRTCLSQLLDIMKSMRNLVK-----KY 262
Query: 478 EPIENREANLVKLDVRVAGDVVDALSIIIDKNKAYE 513
EP + E ++K + AL++I K K YE
Sbjct: 263 EPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYE 298
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,346,832
Number of Sequences: 13198
Number of extensions: 139659
Number of successful extensions: 360
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 34
length of query: 602
length of database: 2,899,336
effective HSP length: 94
effective length of query: 508
effective length of database: 1,658,724
effective search space: 842631792
effective search space used: 842631792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)