BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644984|ref|NP_207154.1| hypothetical protein
[Helicobacter pylori 26695]
(252 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107... 27 1.7
pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From ... 27 1.7
pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With N... 26 5.0
pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherich... 25 6.6
pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarbox... 25 6.6
pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr) 25 6.6
>pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
Length = 247
Score = 27.3 bits (59), Expect = 1.7
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 9/77 (11%)
Query: 6 NYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTG---VIKNRMDLFDYF 62
NYE + G A+F DF+KEF FS + F + + + G ++R DYF
Sbjct: 130 NYESPDFEG--AARFLIDFLKEFDFSLLDPFTXLNINVPAGEIKGWRFTRQSRRRWNDYF 187
Query: 63 ----FPNKRKGWWQKGD 75
P K +W G+
Sbjct: 188 EERVSPFGEKYYWXXGE 204
>pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
Length = 247
Score = 27.3 bits (59), Expect = 1.7
Identities = 23/77 (29%), Positives = 34/77 (43%), Gaps = 9/77 (11%)
Query: 6 NYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTG---VIKNRMDLFDYF 62
NYE + G A+F DF+KEF FS + F + + + G ++R DYF
Sbjct: 130 NYESPDFEG--AARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYF 187
Query: 63 ----FPNKRKGWWQKGD 75
P K +W G+
Sbjct: 188 EERVSPFGEKYYWMMGE 204
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1| Tropinone Reductase-Ii
Length = 260
Score = 25.8 bits (55), Expect = 5.0
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 5/43 (11%)
Query: 196 YEQAQTYS-HDYVLVVVLNLSEKPHLLSIANPLKHLEFKACER 237
Y++A+ Y+ DY L++ +N HL +A+P KA ER
Sbjct: 100 YKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPF----LKASER 138
>pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherichia Coli
Flavohemoglobin Reveals An Unespected Geometry Of The
Distal Heme Pocket
Length = 396
Score = 25.4 bits (54), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 64 PNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVK 101
P + G W K + + H+++ SL + D KG+ VK
Sbjct: 185 PGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVK 222
>pdb|1ORD|A Chain A, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
pdb|1ORD|B Chain B, Mol_id: 1; Molecule: Ornithine Decarboxylase; Chain: A, B;
Ec: 4.1.1.17
Length = 730
Score = 25.4 bits (54), Expect = 6.6
Identities = 16/62 (25%), Positives = 23/62 (36%), Gaps = 8/62 (12%)
Query: 71 WQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAYLKTRYKSMQE 130
W+ GD + + + D F KW E YG + PN ++ T E
Sbjct: 455 WEDGDT--------EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPE 506
Query: 131 TG 132
TG
Sbjct: 507 TG 508
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 25.4 bits (54), Expect = 6.6
Identities = 16/62 (25%), Positives = 23/62 (36%), Gaps = 8/62 (12%)
Query: 71 WQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAYLKTRYKSMQE 130
W+ GD + + + D F KW E YG + PN ++ T E
Sbjct: 455 WEDGDT--------EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPE 506
Query: 131 TG 132
TG
Sbjct: 507 TG 508
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.141 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,541,148
Number of Sequences: 13198
Number of extensions: 66061
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 6
length of query: 252
length of database: 2,899,336
effective HSP length: 86
effective length of query: 166
effective length of database: 1,764,308
effective search space: 292875128
effective search space used: 292875128
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)