BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644990|ref|NP_207160.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (345 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I74|A  Chain A, Streptococcus Mutans Inorganic Pyrophos...    29  0.69
pdb|1K20|A  Chain A, Inorganic Pyrophosphatase (Family Ii) F...    28  1.2
pdb|2MPR|A  Chain A, Maltoporin From Salmonella Typhimurium ...    27  3.4
pdb|1MPR|A  Chain A, Maltoporin From Salmonella Typhimurium ...    25  9.9

>pdb|1I74|A Chain A, Streptococcus Mutans Inorganic Pyrophosphatase
 pdb|1I74|B Chain B, Streptococcus Mutans Inorganic Pyrophosphatase
          Length = 309

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 164 NSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRK 216
           N Y + VL     L+  S ILA   N +     F   L N HA+       +K
Sbjct: 245 NGYSDFVLXITDILNSNSEILALGNNTDKVEAAFNFTLKNNHAFLAGAVSRKK 297



>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
           Gordonii At 1.5 A Resolution
 pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
           Gordonii At 1.5 A Resolution
          Length = 310

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/54 (27%), Positives = 23/54 (41%)

Query: 163 NNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRK 216
           +N Y + VL     ++  S ILA   N++     F   L N HA+       +K
Sbjct: 245 DNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKK 298



>pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium
 pdb|2MPR|B Chain B, Maltoporin From Salmonella Typhimurium
 pdb|2MPR|C Chain C, Maltoporin From Salmonella Typhimurium
          Length = 421

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 30/122 (24%), Positives = 44/122 (35%), Gaps = 30/122 (24%)

Query: 161 TKNNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVD-- 218
           +  N YD +     K  + + F +   G   N +GV EL +  G A  T G K+      
Sbjct: 156 SSQNIYDEV-----KDTANDVFDVRLAGLQTNPDGVLELGVDYGRANTTDGYKLADGASK 210

Query: 219 ----FEELHLRNKLKSFN------SNDAAYLQG-------------TDYLGYWKKAFGKN 255
               F   H ++ LK +N      + DA   QG             T+ + Y  K    N
Sbjct: 211 DGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQGKGQARGSDGSSSFTEKINYANKVINNN 270

Query: 256 AN 257
            N
Sbjct: 271 GN 272



>pdb|1MPR|A Chain A, Maltoporin From Salmonella Typhimurium
 pdb|1MPR|B Chain B, Maltoporin From Salmonella Typhimurium
 pdb|1MPR|C Chain C, Maltoporin From Salmonella Typhimurium
          Length = 427

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 25/93 (26%), Positives = 37/93 (38%), Gaps = 17/93 (18%)

Query: 161 TKNNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVD-- 218
           +  N YD +     K  + + F +   G   N +GV EL +  G A  T G K+      
Sbjct: 156 SSQNIYDEV-----KDTANDVFDVRLAGLQTNPDGVLELGVDYGRANTTDGYKLADGASK 210

Query: 219 ----FEELHLRNKLKSFN------SNDAAYLQG 241
               F   H ++ LK +N      + DA   QG
Sbjct: 211 DGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQG 243



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.330    0.144    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,813,656
Number of Sequences: 13198
Number of extensions: 71510
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 5
length of query: 345
length of database: 2,899,336
effective HSP length: 89
effective length of query: 256
effective length of database: 1,724,714
effective search space: 441526784
effective search space used: 441526784
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)