BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644995|ref|NP_207165.1| hypothetical protein
[Helicobacter pylori 26695]
(202 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 27 1.2
pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcast... 27 2.1
pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Prot... 27 2.1
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 26 2.8
pdb|1QLK|A Chain A, Solution Structure Of Ca(2+)-Loaded Rat... 25 4.7
pdb|1MHO| The 2.0 A Structure Of Holo S100b From Bovine B... 25 6.2
pdb|1UWO|A Chain A, Calcium Form Of Human S100b, Nmr, 20 St... 25 6.2
pdb|1CFP|A Chain A, S100b (S100beta) Nmr Data Was Collected... 25 6.2
pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 8.1
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 8.1
pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Co... 25 8.1
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 25 8.1
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Comp... 25 8.1
pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure 25 8.1
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 25 8.1
pdb|1PLQ| Proliferating Cell Nuclear Antigen (Pcna) (Sync... 25 8.1
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 25 8.1
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 27.3 bits (59), Expect = 1.2
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 131 DTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQDVHDTS 190
D + EK++K +E+ KE +N L +LA+T +L L + ++ D+ D
Sbjct: 35 DNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI 94
Query: 191 KITPSRLQDL 200
S DL
Sbjct: 95 YNQNSNCNDL 104
>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
Length = 481
Score = 26.6 bits (57), Expect = 2.1
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 116 SGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKKQLAETN-HLNKEYNTLD 174
SG + NI I D++ + + + +E N+ NS+ +L E+N L+K L
Sbjct: 406 SGEFDATYQKNISIQDSQVIVTGNLDISTELGNVNNSISNALDKLEESNSKLDKVNVKLT 465
Query: 175 KTRLNAQKFQDVHD 188
T QK D
Sbjct: 466 STSSREQKLISEED 479
>pdb|1F1M|A Chain A, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|B Chain B, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|C Chain C, Crystal Structure Of Outer Surface Protein C (Ospc)
pdb|1F1M|D Chain D, Crystal Structure Of Outer Surface Protein C (Ospc)
Length = 164
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 13/62 (20%)
Query: 23 GSHT---KNGEKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKE 79
G HT K G ++N + L N++K K A + LE +S+K + K AKE
Sbjct: 103 GEHTDLGKEGVTDDNAKKAILKTNNDKTKGADE----------LEKLFESVKNLSKAAKE 152
Query: 80 LV 81
++
Sbjct: 153 ML 154
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.2 bits (56), Expect = 2.8
Identities = 29/149 (19%), Positives = 60/149 (39%), Gaps = 17/149 (11%)
Query: 31 KEENKEIQNLSENDEKIK-----LAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISK 85
+EE + Q L +K++ L +Q +++ A L+ + G K ++ + I +
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 86 AYAHNNEKDRSDFEHFKSRLDKAIDSFNQKSGN------------DNLKLPGNIDIDDTK 133
+ K+R E S L + +K+ N L++ + +
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 134 ALEKFSKSLESEKENIQNSLHQWKKQLAE 162
LEK + LE E ++ + + + Q+AE
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
>pdb|1QLK|A Chain A, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1QLK|B Chain B, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1B4C|A Chain A, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1B4C|B Chain B, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1SYM|A Chain A, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1SYM|B Chain B, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1DT7|A Chain A, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
pdb|1DT7|B Chain B, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
Length = 92
Score = 25.4 bits (54), Expect = 4.7
Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 19/87 (21%)
Query: 103 SRLDKA----IDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKK 158
S L+KA ID F+Q SG + K K KS KE I N L + +
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDK-------------HKLKKS--ELKELINNELSHFLE 46
Query: 159 QLAETNHLNKEYNTLDKTRLNAQKFQD 185
++ E ++K TLD+ FQ+
Sbjct: 47 EIKEQEVVDKVMETLDEDGDGECDFQE 73
>pdb|1MHO| The 2.0 A Structure Of Holo S100b From Bovine Brain
Length = 88
Score = 25.0 bits (53), Expect = 6.2
Identities = 26/87 (29%), Positives = 36/87 (40%), Gaps = 19/87 (21%)
Query: 103 SRLDKA----IDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKK 158
S L+KA ID F+Q SG + K K KS KE I N L + +
Sbjct: 1 SELEKAVVALIDVFHQYSGREGDK-------------HKLKKS--ELKELINNELSHFLE 45
Query: 159 QLAETNHLNKEYNTLDKTRLNAQKFQD 185
++ E ++K TLD FQ+
Sbjct: 46 EIKEQEVVDKVMETLDSDGDGECDFQE 72
>pdb|1UWO|A Chain A, Calcium Form Of Human S100b, Nmr, 20 Structures
pdb|1UWO|B Chain B, Calcium Form Of Human S100b, Nmr, 20 Structures
Length = 92
Score = 25.0 bits (53), Expect = 6.2
Identities = 26/87 (29%), Positives = 36/87 (40%), Gaps = 19/87 (21%)
Query: 103 SRLDKA----IDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKK 158
S L+KA ID F+Q SG + K K KS KE I N L + +
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDK-------------HKLKKS--ELKELINNELSHFLE 46
Query: 159 QLAETNHLNKEYNTLDKTRLNAQKFQD 185
++ E ++K TLD FQ+
Sbjct: 47 EIKEQEVVDKVMETLDNDGDGECDFQE 73
>pdb|1CFP|A Chain A, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
pdb|1CFP|B Chain B, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
Length = 92
Score = 25.0 bits (53), Expect = 6.2
Identities = 26/87 (29%), Positives = 36/87 (40%), Gaps = 19/87 (21%)
Query: 103 SRLDKA----IDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQWKK 158
S L+KA ID F+Q SG + K K KS KE I N L + +
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDK-------------HKLKKS--ELKELINNELSHFLE 46
Query: 159 QLAETNHLNKEYNTLDKTRLNAQKFQD 185
++ E ++K TLD FQ+
Sbjct: 47 EIKEQEVVDKVMETLDSDGDGECDFQE 73
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 24.6 bits (52), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 10/49 (20%)
Query: 137 KFSKSLESE-KENIQNS---------LHQWKKQLAETNHLNKEYNTLDK 175
KFS+ LE+E K I S +H++K+QL H+ YN + K
Sbjct: 544 KFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKK 592
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 131 DTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHL 166
D + EK+++ +E+ KE ++ L ++LA+T +L
Sbjct: 35 DNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNL 70
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526,423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403,700
Length = 847
Score = 24.6 bits (52), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 10/49 (20%)
Query: 137 KFSKSLESE-KENIQNS---------LHQWKKQLAETNHLNKEYNTLDK 175
KFS+ LE+E K I S +H++K+QL H+ YN + K
Sbjct: 545 KFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKK 593
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 131 DTKALEKFSKSLESEKENIQNSLHQWKKQLAETNHL 166
D + EK+++ +E+ KE ++ L ++LA+T +L
Sbjct: 35 DNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNL 70
>pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl- Beta-D-Glucopyranosylamine
Length = 846
Score = 24.6 bits (52), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 10/49 (20%)
Query: 137 KFSKSLESE-KENIQNS---------LHQWKKQLAETNHLNKEYNTLDK 175
KFS+ LE+E K I S +H++K+QL H+ YN + K
Sbjct: 544 KFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKK 592
>pdb|1HS7|A Chain A, Vam3p N-Terminal Domain Solution Structure
Length = 97
Score = 24.6 bits (52), Expect = 8.1
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 84 SKAYAHNNEKDRSDFEHFKSRLDKAIDSFNQKSGNDNLK 122
S H N K +DF++ K++ S+NQ+ LK
Sbjct: 59 SNILIHQNGKLSADFKNLKTKYQSLQQSYNQRKSLFPLK 97
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (50%)
Query: 145 EKENIQNSLHQWKKQLAETNHLNKEYNTL 173
EKEN +L +K + T L+K Y L
Sbjct: 145 EKENFMQNLRNFKIVITTTQFLSKHYREL 173
>pdb|1PLQ| Proliferating Cell Nuclear Antigen (Pcna) (Synchrotron X-Ray
Diffraction)
pdb|1PLR| Proliferating Cell Nuclear Antigen (Pcna)
Length = 258
Score = 24.6 bits (52), Expect = 8.1
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 44 DEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAKELVGISKAYAHNNEKDRSDFEHFKS 103
D I L + K+D +A SLK MD DA L Y S+F
Sbjct: 97 DSIILLFEDTKKDRIAE-------YSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVR 149
Query: 104 RLDKAIDSFNQKSGNDNLKLPGNIDIDDTKALEKFSKSLESEKENIQNSLHQ 155
L + DS N + +K + DI + K +E + +I+ + Q
Sbjct: 150 DLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQ 201
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 24.6 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (50%)
Query: 145 EKENIQNSLHQWKKQLAETNHLNKEYNTL 173
EKEN +L +K + T L+K Y L
Sbjct: 145 EKENFMQNLRNFKIVITTTQFLSKHYREL 173
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.306 0.125 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,124,968
Number of Sequences: 13198
Number of extensions: 44540
Number of successful extensions: 139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 19
length of query: 202
length of database: 2,899,336
effective HSP length: 84
effective length of query: 118
effective length of database: 1,790,704
effective search space: 211303072
effective search space used: 211303072
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (24.6 bits)