BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644996|ref|NP_207166.1| hypothetical protein
[Helicobacter pylori 26695]
(133 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1TBD| Solution Structure Of The Origin Dna Binding Do... 29 0.21
pdb|1JJR|A Chain A, The Three-Dimensional Structure Of The ... 26 1.8
pdb|1L9V|A Chain A, Non Structural Protein Encoded By Gene ... 25 3.0
pdb|1CQQ|A Chain A, Type 2 Rhinovirus 3c Protease With Ag70... 25 3.9
pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Syntha... 24 5.1
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A Fro... 24 5.1
pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate I... 24 5.1
>pdb|1TBD| Solution Structure Of The Origin Dna Binding Domain Of Sv40
T-Antigen, Nmr, Minimized Average Structure
pdb|2TBD| Sv40 T Antigen Dna-Binding Domain, Nmr, 30 Structures
Length = 134
Score = 28.9 bits (63), Expect = 0.21
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 53 YDFLICLGVCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQ 95
+ FLIC GV ++ L+Y +D I + +K+++F +
Sbjct: 90 FSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPE 132
>pdb|1JJR|A Chain A, The Three-Dimensional Structure Of The C-Terminal Dna
Binding Domain Of Human Ku70
Length = 151
Score = 25.8 bits (55), Expect = 1.8
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 60 GVCEDQLLYRIFK--KDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELK 117
G+ + +LL + K +DK+ Y +E K + + K VPM + Y L LK+ +
Sbjct: 81 GLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQE 140
Query: 118 EITNLIKELE 127
+ L K +
Sbjct: 141 LLEALTKHFQ 150
>pdb|1L9V|A Chain A, Non Structural Protein Encoded By Gene Segment 8 Of
Rotavirus (Nsp2), An Ntpase, Ssrna Binding And Nucleic
Acid Helix-Destabilizing Protein
Length = 317
Score = 25.0 bits (53), Expect = 3.0
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 88 KQNEFKKQLVPMNPDNQVNYKLTLNLKELKEITNL-IKEL 126
K + QL+P+ N + YK+TLN E K I+++ +KEL
Sbjct: 168 KLTYLEHQLMPILDQNFIEYKVTLN--EDKPISDVHVKEL 205
>pdb|1CQQ|A Chain A, Type 2 Rhinovirus 3c Protease With Ag7088 Inhibitor
Length = 180
Score = 24.6 bits (52), Expect = 3.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 5 IDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLIC 58
+DG+ I D YD+ K+G+ E+ + R P D+ C
Sbjct: 49 VDGITTKVI--DSYDLYNKNGIKLEITVLKLDRNEKFRDIRRYIPNNEDDYPNC 100
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From
Bacillus Subtilis
Length = 279
Score = 24.3 bits (51), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 5 IDGVINDGIIHDEYDIMTK 23
I +IN+GI +E+D+ TK
Sbjct: 12 IKDIINNGISDEEFDVRTK 30
>pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus
Subtilis
Length = 278
Score = 24.3 bits (51), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 5 IDGVINDGIIHDEYDIMTK 23
I +IN+GI +E+D+ TK
Sbjct: 11 IKDIINNGISDEEFDVRTK 29
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 24.3 bits (51), Expect = 5.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 2 LNAIDGVINDGIIHDEYDIM---TKSGV 26
LN I GVI +GI D DI+ T+ GV
Sbjct: 197 LNTIPGVIENGIFADIADIVIVGTREGV 224
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.142 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,504
Number of Sequences: 13198
Number of extensions: 32641
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 2,899,336
effective HSP length: 78
effective length of query: 55
effective length of database: 1,869,892
effective search space: 102844060
effective search space used: 102844060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)