BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644997|ref|NP_207167.1| hypothetical protein
[Helicobacter pylori 26695]
(236 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At ... 26 4.6
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 25 6.0
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 25 6.0
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 25 6.0
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 25 6.0
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 25 6.0
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 25 6.0
pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Ch... 25 6.0
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 25 6.0
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 25 6.0
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 25 7.9
pdb|1B54| Crystal Structure Of A Yeast Hypothetical Prote... 25 7.9
pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical... 25 7.9
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
Length = 345
Score = 25.8 bits (55), Expect = 4.6
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 81 LEKNAFIDFKNKEVDVHCVF-QIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFTVSL--- 136
+ +N N +D+ V + + KY K ++ +++HKE F E +K F V
Sbjct: 4 VRENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAG 63
Query: 137 --AKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKSGIAVV 182
+N +W+ Q + ++TF+ I + E +K K+ A V
Sbjct: 64 GSTQNSIKVAQWMIQQP---HKAATFFGCIGIDKFGEILKRKAAEAHV 108
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 25 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 69
>pdb|1PIO|A Chain A, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
pdb|1PIO|B Chain B, Mol_id: 1; Molecule: Beta-Lactamase; Chain: A, B; Synonym:
Penicillinase; Ec: 3.5.2.6; Engineered: Yes; Mutation:
Ins(Met 30), A238s, Del(I239)
Length = 257
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 26 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 70
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 25 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 69
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 171 EEVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHI 222
+EVK+ S + ST+KA+N+ + L +++ + K N H+ K I
Sbjct: 71 KEVKFNSDKRFAYASTSKAINSAI--LLEQVPYNK-----LNKKVHINKDDI 115
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 25.0 bits (53), Expect = 7.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 131 VFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKS 177
VF++SL N E + S Y + K T VE+F+E K K+
Sbjct: 27 VFSISLLNNEVIKAEQLNINSQSKYTNLQNLKITDKVEDFKEDKEKA 73
>pdb|1B54| Crystal Structure Of A Yeast Hypothetical Protein - A Structure
From Bnl's Human Proteome Project
Length = 257
Score = 25.0 bits (53), Expect = 7.9
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
Query: 172 EVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLD 231
++ Y G+ + + L K K L +I W L TN C L K ++ + +D
Sbjct: 57 QILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSV-ETID 115
Query: 232 SLK 234
SLK
Sbjct: 116 SLK 118
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
Selenomet Crystal
Length = 256
Score = 25.0 bits (53), Expect = 7.9
Identities = 18/63 (28%), Positives = 28/63 (43%), Gaps = 1/63 (1%)
Query: 172 EVKYKSGIAVVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLD 231
++ Y G+ + + L K K L +I W L TN C L K ++ + +D
Sbjct: 56 QILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSV-ETID 114
Query: 232 SLK 234
SLK
Sbjct: 115 SLK 117
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,384,227
Number of Sequences: 13198
Number of extensions: 53544
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 13
length of query: 236
length of database: 2,899,336
effective HSP length: 85
effective length of query: 151
effective length of database: 1,777,506
effective search space: 268403406
effective search space used: 268403406
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)