BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644998|ref|NP_207168.1| biotin carboxylase (accC)
[Helicobacter pylori 26695]
(458 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase... 443 e-125
pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mu... 442 e-125
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small S... 55 1e-08
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthe... 55 1e-08
pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught ... 53 8e-08
pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Ph... 50 4e-07
pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp An... 50 5e-07
pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of ... 44 4e-05
pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase 32 0.11
pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase 31 0.25
pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glyci... 31 0.25
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Enco... 31 0.25
pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An ... 28 2.8
pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2C... 28 2.8
pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleu... 26 8.2
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 26 8.2
>pdb|1BNC|A Chain A, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1BNC|B Chain B, Mol_id: 1; Molecule: Biotin Carboxylase; Chain: A, B; Ec:
6.3.4.14
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
Length = 449
Score = 443 bits (1140), Expect = e-125
Identities = 227/443 (51%), Positives = 308/443 (69%), Gaps = 4/443 (0%)
Query: 16 LSRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSESYL 75
L +I+IANRGEIALR ++ +E+G +++A++S AD+D ++ A VCIG A S +SYL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 76 NIPAIISAAELFEADAIFPGYGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKS 135
NIPAIISAAE+ A AI PGYGFLSEN NF E FIGP A+ + LM DK A +
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 121
Query: 136 VMKEAGMPVIEGSDGLLKSYQEAEE-IADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNL 194
MK+AG+P + GSDG L + IA +IGYPVIIKA+ GGGGRGMRVV ++L
Sbjct: 122 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181
Query: 195 YLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIE 254
EA +AF + VY+EK++ P+H+E+Q+LAD GN I++ ERDCS+QRR QK++E
Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241
Query: 255 ETPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTI 314
E PA + +R + E KA IGY GAGTFEFL ++ +FYF+EMNTR+QVEH +
Sbjct: 242 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENG--EFYFIEMNTRIQVEHPV 299
Query: 315 SEMVSGLNLIEWMIKIAQGEKLP-KQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIA 373
+EM++G++LI+ ++IA G+ L KQE ++GHA+ECRI AEDP F PSPGKIT + A
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHA 359
Query: 374 PGGVNVRLDSHAHANYVVPTHYDSMIGKLIVWGENRERAIAKMKRALKEFKVEGIKTTIP 433
PGG VR +SH +A Y VP +YDSMIGKLI +GENR+ AIA+MK AL+E ++GIKT +
Sbjct: 360 PGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVD 419
Query: 434 FHLEMLENADFRQAKIHTKYLEE 456
+ ++ + +F+ + YLE+
Sbjct: 420 LQIRIMNDENFQHGGTNIHYLEK 442
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 442 bits (1136), Expect = e-125
Identities = 226/443 (51%), Positives = 308/443 (69%), Gaps = 4/443 (0%)
Query: 16 LSRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSESYL 75
L +I+IANRGEIALR ++ +E+G +++A++S AD+D ++ A VCIG A S +SYL
Sbjct: 5 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 76 NIPAIISAAELFEADAIFPGYGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKS 135
NIPAIISAAE+ A AI PGYGFLSEN NF E FIGP A+ + LM DK A +
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 124
Query: 136 VMKEAGMPVIEGSDGLLKSYQEAEE-IADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNL 194
MK+AG+P + GSDG L + IA +IGYPVIIKA+ GGGGRGMRVV ++L
Sbjct: 125 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 184
Query: 195 YLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIE 254
EA +AF + VY+EK++ P+H+E+Q+LAD GN I++ ERDCS+QRR QK++E
Sbjct: 185 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 244
Query: 255 ETPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTI 314
E PA + +R + E KA IGY GAGTFEFL ++ +FYF++MNTR+QVEH +
Sbjct: 245 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFENG--EFYFIKMNTRIQVEHPV 302
Query: 315 SEMVSGLNLIEWMIKIAQGEKLP-KQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIA 373
+EM++G++LI+ ++IA G+ L KQE ++GHA+ECRI AEDP F PSPGKIT + A
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDPNTFLPSPGKITRFHA 362
Query: 374 PGGVNVRLDSHAHANYVVPTHYDSMIGKLIVWGENRERAIAKMKRALKEFKVEGIKTTIP 433
PGG VR +SH +A Y VP +YDSMIGKLI +GENR+ AIA+MK AL+E ++GIKT +
Sbjct: 363 PGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVD 422
Query: 434 FHLEMLENADFRQAKIHTKYLEE 456
+ ++ + +F+ + YLE+
Sbjct: 423 LQIRIMNDENFQHGGTNIHYLEK 445
>pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 1073
Score = 55.5 bits (132), Expect = 1e-08
Identities = 48/235 (20%), Positives = 104/235 (43%), Gaps = 31/235 (13%)
Query: 117 IGPSAKVMALMSDKSKAKSVMKEAGMPVIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAG 176
IG S + D+ + + ++ + + + ++ + + + A E A +IGYP++++ +
Sbjct: 662 IGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYV 719
Query: 177 GGGRGMRVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKH---- 232
GGR M +V D++ L+ + A+S D V L+ F++ ++V + D
Sbjct: 720 LGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLI 775
Query: 233 GNV--------IHVGERDCSVQRRQQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVG 284
G + +H G+ CS+ PA L + +++ + + K A + G
Sbjct: 776 GGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRG 824
Query: 285 AGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEMVSGLNLIEWMIKIAQGEKLPKQ 339
+F + +N + Y +E+N R +G+ L + ++ G+ L +Q
Sbjct: 825 LMNVQFAVKNN--EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ 877
Score = 52.8 bits (125), Expect = 8e-08
Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 36/344 (10%)
Query: 90 DAIFPGYGFLSENQNFVEICSHHSLE-----FIGPSAKVMALMSDKSKAKSVMKEAGMPV 144
DA+ P G + +E+ LE IG +A + D+ + MK+ G+
Sbjct: 84 DAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET 143
Query: 145 IEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALS 204
G+ + +EA +A +G+P II+ + GG G + ++ + + + L
Sbjct: 144 ARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC----ARGLD 197
Query: 205 AFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQR------RQQKLIEETPA 258
+ +++ + K E++++ DK+ N I V CS++ I PA
Sbjct: 198 LSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPA 253
Query: 259 VVLEEGVRERLLETAIKAAKYIGY-VGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEM 317
L + + + ++ + IG G +F ++ +EMN R+ ++
Sbjct: 254 QTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASK 313
Query: 318 VSGLNLIEWMIKIAQGEKLPKQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIAPGGV 377
+G + + K+A G L + + G P F PS +++
Sbjct: 314 ATGFPIAKVAAKLAVGYTLDELMNDITGGRT---------PASFEPS----IDYVVTKIP 360
Query: 378 NVRLDSHAHANYVVPTHYDSMIGKLIVWGENRERAIAKMKRALK 421
+ A AN + T S +G+++ G ++ ++ K R L+
Sbjct: 361 RFNFEKFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGLE 403
>pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
Length = 1073
Score = 55.5 bits (132), Expect = 1e-08
Identities = 48/235 (20%), Positives = 104/235 (43%), Gaps = 31/235 (13%)
Query: 117 IGPSAKVMALMSDKSKAKSVMKEAGMPVIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAG 176
IG S + D+ + + ++ + + + ++ + + + A E A +IGYP++++ +
Sbjct: 662 IGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYV 719
Query: 177 GGGRGMRVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKH---- 232
GGR M +V D++ L+ + A+S D V L+ F++ ++V + D
Sbjct: 720 LGGRAMEIVYDEADLRRYF----QTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLI 775
Query: 233 GNV--------IHVGERDCSVQRRQQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVG 284
G + +H G+ CS+ PA L + +++ + + K A + G
Sbjct: 776 GGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRG 824
Query: 285 AGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEMVSGLNLIEWMIKIAQGEKLPKQ 339
+F + +N + Y +E+N R +G+ L + ++ G+ L +Q
Sbjct: 825 LMNVQFAVKNN--EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ 877
Score = 52.8 bits (125), Expect = 8e-08
Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 36/344 (10%)
Query: 90 DAIFPGYGFLSENQNFVEICSHHSLE-----FIGPSAKVMALMSDKSKAKSVMKEAGMPV 144
DA+ P G + +E+ LE IG +A + D+ + MK+ G+
Sbjct: 84 DAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET 143
Query: 145 IEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALS 204
G+ + +EA +A +G+P II+ + GG G + ++ + + + L
Sbjct: 144 ARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC----ARGLD 197
Query: 205 AFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQR------RQQKLIEETPA 258
+ +++ + K E++++ DK+ N I V CS++ I PA
Sbjct: 198 LSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPA 253
Query: 259 VVLEEGVRERLLETAIKAAKYIGY-VGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEM 317
L + + + ++ + IG G +F ++ +EMN R+ ++
Sbjct: 254 QTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASK 313
Query: 318 VSGLNLIEWMIKIAQGEKLPKQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIAPGGV 377
+G + + K+A G L + + G P F PS +++
Sbjct: 314 ATGFPIAKVAAKLAVGYTLDELMNDITGGRT---------PASFEPS----IDYVVTKIP 360
Query: 378 NVRLDSHAHANYVVPTHYDSMIGKLIVWGENRERAIAKMKRALK 421
+ A AN + T S +G+++ G ++ ++ K R L+
Sbjct: 361 RFNFEKFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGLE 403
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1058
Score = 52.8 bits (125), Expect = 8e-08
Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 36/344 (10%)
Query: 90 DAIFPGYGFLSENQNFVEICSHHSLE-----FIGPSAKVMALMSDKSKAKSVMKEAGMPV 144
DA+ P G + +E+ LE IG +A + D+ + MK+ G+
Sbjct: 84 DAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET 143
Query: 145 IEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALS 204
G+ + +EA +A +G+P II+ + GG G + ++ + + + L
Sbjct: 144 ARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEIC----ARGLD 197
Query: 205 AFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQR------RQQKLIEETPA 258
+ +++ + K E++++ DK+ N I V CS++ I PA
Sbjct: 198 LSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPA 253
Query: 259 VVLEEGVRERLLETAIKAAKYIGY-VGAGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEM 317
L + + + ++ + IG G +F ++ +EMN R+ ++
Sbjct: 254 QTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASK 313
Query: 318 VSGLNLIEWMIKIAQGEKLPKQESFSLKGHAIECRITAEDPKKFYPSPGKITEWIAPGGV 377
+G + + K+A G L + + G P F PS +++
Sbjct: 314 ATGFPIAKVAAKLAVGYTLDELMNDITGGRT---------PASFEPS----IDYVVTKIP 360
Query: 378 NVRLDSHAHANYVVPTHYDSMIGKLIVWGENRERAIAKMKRALK 421
+ A AN + T S +G+++ G ++ ++ K R L+
Sbjct: 361 RFNFEKFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGLE 403
Score = 42.4 bits (98), Expect = 1e-04
Identities = 45/235 (19%), Positives = 99/235 (41%), Gaps = 46/235 (19%)
Query: 117 IGPSAKVMALMSDKSKAKSVMKEAGMPVIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAG 176
IG S + D+ + + ++ + + + ++ + + + A E A +IGYP++++AA
Sbjct: 662 IGTSPDAIDRAEDRERFQHAVER--LKLKQPANATVTAIEMAVEKAKEIGYPLVVRAA-- 717
Query: 177 GGGRGMRVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKH---- 232
M +V D++ L+ + A V L+ F++ ++V + D
Sbjct: 718 -----MEIVYDEADLRRYFQTA------------VLLDHFLDDAVEVDVDAICDGEMVLI 760
Query: 233 GNV--------IHVGERDCSVQRRQQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVG 284
G + +H G+ CS+ PA L + +++ + + K A + G
Sbjct: 761 GGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRG 809
Query: 285 AGTFEFLLDSNMKDFYFMEMNTRLQVEHTISEMVSGLNLIEWMIKIAQGEKLPKQ 339
+F + +N + Y +E+N R +G+ L + ++ G+ L +Q
Sbjct: 810 LMNVQFAVKNN--EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQ 862
>pdb|1IOV| Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN| Mol_id: 1; Molecule: D-Alanine--D-Alanine Ligase; Chain: Null; Ec:
6.3.2.4
Length = 306
Score = 50.4 bits (119), Expect = 4e-07
Identities = 62/235 (26%), Positives = 104/235 (43%), Gaps = 28/235 (11%)
Query: 114 LEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI--------EGSDGLLKSYQEAEEIADKI 165
L + G AL DK ++K + + AG+PV E GL S ++ EI+ +
Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGL--SDKQLAEIS-AL 137
Query: 166 GYPVIIKAAAGGGGRGM-RVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIE 224
G PVI+K + G GM +VV + + L LA + D V +EK+++ P+
Sbjct: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-------HDEEVLIEKWLSGPE-FT 189
Query: 225 VQILADKHGNVIHVGERDCSVQRRQQKLIEETP---AVVLEEGVRERLLETAIKAAKYIG 281
V IL ++ I + + L +ET LE L +KA +G
Sbjct: 190 VAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249
Query: 282 YVGAGTFEFLLDSNMKDFYFMEMNTRL-QVEHTISEMV---SGLNLIEWMIKIAQ 332
G G + +LDS+ FY +E NT H++ M +G++ + +++I +
Sbjct: 250 CKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303
>pdb|1IOW| Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphinate
Length = 306
Score = 50.1 bits (118), Expect = 5e-07
Identities = 62/235 (26%), Positives = 104/235 (43%), Gaps = 28/235 (11%)
Query: 114 LEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI--------EGSDGLLKSYQEAEEIADKI 165
L + G AL DK ++K + + AG+PV E GL S ++ EI+ +
Sbjct: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGL--SDKQLAEIS-AL 137
Query: 166 GYPVIIKAAAGGGGRGM-RVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKHIE 224
G PVI+K + G GM +VV + + L LA + D V +EK+++ P+
Sbjct: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-------HDEEVLIEKWLSGPE-FT 189
Query: 225 VQILADKHGNVIHVGERDCSVQRRQQKLIEETP---AVVLEEGVRERLLETAIKAAKYIG 281
V IL ++ I + + L +ET LE L +KA +G
Sbjct: 190 VAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249
Query: 282 YVGAGTFEFLLDSNMKDFYFMEMNTRL-QVEHTISEMV---SGLNLIEWMIKIAQ 332
G G + +LDS+ FY +E NT H++ M +G++ + +++I +
Sbjct: 250 CKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 43.9 bits (102), Expect = 4e-05
Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 57/334 (17%)
Query: 13 KKELSRILIANRGE--IALRAIQT----IQEMGKESIAIYSIADKDAHYLNTASAKVCIG 66
KK ++ I N E ++ R+ Q I+ GK I +++IA ++ +L+T S+K +
Sbjct: 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA-QNGFFLDTESSKKILA 61
Query: 67 -------------GAKSSESYLNIPAIISAAELFEADAIFPG-YGFLSENQNFVEICSHH 112
+S+ I A+ SA + D FP +G L E+ +
Sbjct: 62 LEDEQPIVDAFMKTVDASDPLARIHALKSAGDF---DIFFPVVHGNLGEDGTLQGLFKLL 118
Query: 113 SLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVIEGSDGLLKSYQEA-----EEIADKIGY 167
++G + A+ DK+ K ++ G I + ++ + A ++I ++G
Sbjct: 119 DKPYVGAPLRGHAVSFDKALTKELLTVNG---IRNTKYIVVDPESANNWSWDKIVAELGN 175
Query: 168 PVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALS-AFG-DGSVYLEKFINKPKHIEV 225
V +KAA G G+ V + + TEALS +F D V +E+ +N + +EV
Sbjct: 176 IVFVKAANQGSSVGISRVTNAEEY--------TEALSDSFQYDYKVLIEEAVNGARELEV 227
Query: 226 QILADKHGNVIHVGERDCSVQRR-------QQKLIEET------PAVVLEEGVRERLLET 272
++ + V +G Q K ++ + PA + E +E + +
Sbjct: 228 GVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKE-VKQM 286
Query: 273 AIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306
A+ A K + G +FLLD N Y E NT
Sbjct: 287 ALDAYKVLNLRGEARMDFLLDENNVP-YLGEPNT 319
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 32.3 bits (72), Expect = 0.11
Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 28/236 (11%)
Query: 85 ELFEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMP 143
E+ D F +G E+ + + + F+G + A+ DKS V K AG+
Sbjct: 87 EINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGI- 145
Query: 144 VIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEAL 203
+ ++ +A YPV +K A G G++ V +L +A
Sbjct: 146 ---ATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY-- 200
Query: 204 SAFGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERD-----CSVQRRQQKLIEE--- 255
D + +E+ ++ EV + + VGE D + R Q++ E
Sbjct: 201 ----DSKILIEQAVS---GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGS 253
Query: 256 -----TPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNT 306
T L R R+ ET K K +G G + L N + E+NT
Sbjct: 254 ENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGR-IVLNEVNT 308
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 31.2 bits (69), Expect = 0.25
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 85 ELFEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMP 143
E+ D F +G E+ + + + F+G + A+ DKS V K AG+
Sbjct: 87 EINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGI- 145
Query: 144 VIEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKL 191
+ ++ +A YPV +K A G G++ V +L
Sbjct: 146 ---ATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADEL 190
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 31.2 bits (69), Expect = 0.25
Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 36/299 (12%)
Query: 17 SRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSESYLN 76
+R+++ GE+ Q +G E IA+ AD A ++ S + + L+
Sbjct: 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVI---------NMLD 62
Query: 77 IPAIISAAELFEADAIFPGYGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSV 136
A+ EL + I P ++ + +++ L + + M+ + +
Sbjct: 63 GDALRRVVELEKPHYIVPEIEAIATDM-LIQL-EEEGLNVVPCARATKLTMNREGIRRLA 120
Query: 137 MKEAGMPV----IEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLK 192
+E +P S+ L + E +AD IGYP I+K G+G + +L
Sbjct: 121 AEELQLPTSTYRFADSESLFR-----EAVAD-IGYPCIVKPVMSSSGKGQTFIRSAEQLA 174
Query: 193 NLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIH----VGERDCSVQRR 248
+ A+ + G G V +E + E+ +L + +H VG R R
Sbjct: 175 QAWKYAQQGGRA--GAGRVIVEGVVK--FDFEITLLTVSAVDGVHFCAPVGHRQEDGDYR 230
Query: 249 QQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR 307
+ ++ + L ER E A K +G G G F L + F E++ R
Sbjct: 231 ESWQPQQMSPLAL-----ERAQEIARKVVLALG--GYGLFGVELFVCGDEVIFSEVSPR 282
>pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
Length = 392
Score = 31.2 bits (69), Expect = 0.25
Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 36/299 (12%)
Query: 17 SRILIANRGEIALRAIQTIQEMGKESIAIYSIADKDAHYLNTASAKVCIGGAKSSESYLN 76
+R+++ GE+ Q +G E IA+ AD A ++ S + + L+
Sbjct: 13 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVI---------NMLD 63
Query: 77 IPAIISAAELFEADAIFPGYGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSV 136
A+ EL + I P ++ + +++ L + + M+ + +
Sbjct: 64 GDALRRVVELEKPHYIVPEIEAIATDM-LIQL-EEEGLNVVPCARATKLTMNREGIRRLA 121
Query: 137 MKEAGMPV----IEGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLK 192
+E +P S+ L + E +AD IGYP I+K G+G + +L
Sbjct: 122 AEELQLPTSTYRFADSESLFR-----EAVAD-IGYPCIVKPVMSSSGKGQTFIRSAEQLA 175
Query: 193 NLYLAAETEALSAFGDGSVYLEKFINKPKHIEVQILADKHGNVIH----VGERDCSVQRR 248
+ A+ + G G V +E + E+ +L + +H VG R R
Sbjct: 176 QAWKYAQQGGRA--GAGRVIVEGVVK--FDFEITLLTVSAVDGVHFCAPVGHRQEDGDYR 231
Query: 249 QQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR 307
+ ++ + L ER E A K +G G G F L + F E++ R
Sbjct: 232 ESWQPQQMSPLAL-----ERAQEIARKVVLALG--GYGLFGVELFVCGDEVIFSEVSPR 283
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
Length = 253
Score = 27.7 bits (60), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 136 VMKEAGMPVIEGSDGLLKSYQEAEEIADKIGY 167
+ E+G+P G DGL + Y + EE+A G+
Sbjct: 26 ISAESGIPTFRGEDGLWRKY-DPEEVASISGF 56
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
Length = 303
Score = 27.7 bits (60), Expect = 2.8
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 147 GSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSAF 206
G G ++++Q+ E+I + Y V+ KA ++ G+ LK + L ETE + +
Sbjct: 1 GPLGSMENFQKVEKIGEGT-YGVVYKARN-------KLTGEVVALKKIRLDTETEGVPST 52
Query: 207 GDGSVYLEKFINKPKHIEV 225
+ L K +N P +++
Sbjct: 53 AIREISLLKELNHPNIVKL 71
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 26.2 bits (56), Expect = 8.2
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 126 LMSDKSKAKSVMKEAGMPVIEGSDGLLK--SYQEAEEIADKIG---YPVIIKAAAGG--- 177
++S ++V MP GS+G +K S +EA+ I + YP++ K++
Sbjct: 4 VLSSFPAPQAVQDNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLAL 63
Query: 178 -------------GGRGMRVVGDKSKLKNLYLAAETEALSAFGDGSVYLEKFINKPKH 222
G + + G L+NL + + + D + LE F ++P+H
Sbjct: 64 IICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEH 121
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 26.2 bits (56), Expect = 8.2
Identities = 28/102 (27%), Positives = 41/102 (39%), Gaps = 12/102 (11%)
Query: 193 NLYLAAETE-ALSAFGDGSVYLEKFINKPKHIEVQIL---------ADKHGNVIHVGERD 242
NL ET L+ + G Y+ + K E++ L + G V +R+
Sbjct: 881 NLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKRE 940
Query: 243 CSVQRRQQKLIEETPAVVLEEGVRERLLETAIKAAKYIGYVG 284
V RR +KL TP EE ++E L+ K Y G G
Sbjct: 941 VEVLRRAEKLGLVTPGKTPEEQLKELFLQG--KVVLYDGRTG 980
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.134 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,562,037
Number of Sequences: 13198
Number of extensions: 104148
Number of successful extensions: 307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 21
length of query: 458
length of database: 2,899,336
effective HSP length: 91
effective length of query: 367
effective length of database: 1,698,318
effective search space: 623282706
effective search space used: 623282706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)