BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644999|ref|NP_207169.1| biotin carboxyl carrier
protein (fabE) [Helicobacter pylori 26695]
(156 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BDO| Structure Of The Biotinyl Domain Of Acetyl-Coen... 68 4e-13
pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Doma... 68 4e-13
pdb|1A6X| Structure Of The Apo-Biotin Carboxyl Carrier Pr... 66 2e-12
pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Trans... 42 3e-05
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Co... 29 0.28
pdb|1MEC|3 Chain 3, Mengo Encephalomyocarditis Virus Coat P... 29 0.28
pdb|2MEV|3 Chain 3, Mengo Encephalomyocarditis Virus Coat P... 28 0.36
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 26 2.4
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 25 3.1
pdb|1EG5|B Chain B, Nifs-Like Protein >gi|7546280|pdb|1EG5|... 25 5.3
pdb|1ECX|B Chain B, Nifs-Like Protein >gi|7546479|pdb|1ECX|... 25 5.3
pdb|1AXC|E Chain E, Human Pcna >gi|2914385|pdb|1AXC|C Chain... 24 6.9
pdb|1A80| Native 2,5-Diketo-D-Gluconic Acid Reductase A F... 24 6.9
pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-G... 24 6.9
pdb|1AXC|A Chain A, Human Pcna 24 6.9
>pdb|1BDO| Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A Carboxylase
Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 68.2 bits (165), Expect = 4e-13
Identities = 33/74 (44%), Positives = 47/74 (62%)
Query: 81 VLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEIEVEYPCKVVSVEVGD 140
V SPMVGTFY PSP A+ +++ G + G + IVEAMK+MN+IE + V ++ V
Sbjct: 7 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66
Query: 141 AQPVEYGTKLIKVE 154
QPVE+ L+ +E
Sbjct: 67 GQPVEFDEPLVVIE 80
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 68.2 bits (165), Expect = 4e-13
Identities = 33/74 (44%), Positives = 47/74 (62%)
Query: 81 VLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEIEVEYPCKVVSVEVGD 140
V SPMVGTFY PSP A+ +++ G + G + IVEAMK+MN+IE + V ++ V
Sbjct: 9 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 68
Query: 141 AQPVEYGTKLIKVE 154
QPVE+ L+ +E
Sbjct: 69 GQPVEFDEPLVVIE 82
>pdb|1A6X| Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-Bccp87)
Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr, 49
Structures
Length = 87
Score = 66.2 bits (160), Expect = 2e-12
Identities = 32/73 (43%), Positives = 46/73 (62%)
Query: 81 VLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEIEVEYPCKVVSVEVGD 140
V SPMVGTFY PSP A+ +++ G + G + IVEAMK+MN+IE + V ++ V
Sbjct: 14 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 73
Query: 141 AQPVEYGTKLIKV 153
QPVE+ L+ +
Sbjct: 74 GQPVEFDEPLVVI 86
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 42.0 bits (97), Expect = 3e-05
Identities = 28/76 (36%), Positives = 40/76 (51%), Gaps = 7/76 (9%)
Query: 78 EDFVLSPMVGTFYHAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEIEVEYPCKVVSVE 137
E + +P+ GT ++ VK GDT+K GQ V ++EAMK+ EI KV V
Sbjct: 8 EGEIPAPLAGTV-------SKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Query: 138 VGDAQPVEYGTKLIKV 153
V + V+ G LIK+
Sbjct: 61 VKERDAVQGGQGLIKI 76
>pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|1JEV|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kwk
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With
Tri-Lysine
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl- Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminopropanoic Acid-Lysine
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys-Lys-Ala
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1RKM| Structure Of Oppa
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1OLA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With A
Four-Residue Peptide
Length = 517
Score = 28.9 bits (63), Expect = 0.28
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 NLSEIEELIKEFK-ASDLGHLKLKHEHFELVLDKESAYAKKSALNPAHSPAP 52
+++ I+++I K A+DLG L FE+ L + Y K ++P+ SP P
Sbjct: 117 HIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPYFYKLLVHPSVSPVP 168
>pdb|1MEC|3 Chain 3, Mengo Encephalomyocarditis Virus Coat Protein (Ph 4.6)
Length = 231
Score = 28.9 bits (63), Expect = 0.28
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 49 SPAPIMVEASMPSVQTPVPMVCTPIVDKK------------EDFVLSPMVGTFYHAPSPG 96
SP P+ + + + +P PI K +DF+ + TF P
Sbjct: 1 SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQIPTFIGNKMPN 60
Query: 97 AEPYVKAGDTLKKGQIVGIVE 117
A PY++A +T K Q + + +
Sbjct: 61 AVPYIEASNTAVKTQPLAVYQ 81
>pdb|2MEV|3 Chain 3, Mengo Encephalomyocarditis Virus Coat Protein
Length = 231
Score = 28.5 bits (62), Expect = 0.36
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 49 SPAPIMVEASMPSVQTPVPMVCTPIVDKK------------EDFVLSPMVGTFYHAPSPG 96
SP P+ + + + +P PI K +DF+ + TF P
Sbjct: 1 SPIPVTIREHAGTWYSTLPDSTVPIYGKTPVAPANYMVGEYKDFLEIAQIPTFIGNKVPN 60
Query: 97 AEPYVKAGDTLKKGQIVGIVE 117
A PY++A +T K Q + + +
Sbjct: 61 AVPYIEASNTAVKTQPLAVYQ 81
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 25.8 bits (55), Expect = 2.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 110 GQIVGIVEAMKIMNEIEVEYPCKVVSVEVGDAQPVEYG 147
G I+ + I+ E++VE+P + VEV AQ G
Sbjct: 56 GDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVG 93
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 110 GQIVGIVEAMKIMNEIEVEYPCKVVSVEVGDAQ 142
G IV + + I+ E++VE+P + VEV Q
Sbjct: 55 GDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQ 87
>pdb|1EG5|B Chain B, Nifs-Like Protein
pdb|1EG5|A Chain A, Nifs-Like Protein
Length = 384
Score = 24.6 bits (52), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (52%)
Query: 112 IVGIVEAMKIMNEIEVEYPCKVVSVEVGDAQPVEYGTKLIK 152
+V + E K+++E + EVG QPVE T+++K
Sbjct: 126 VVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVK 166
>pdb|1ECX|B Chain B, Nifs-Like Protein
pdb|1ECX|A Chain A, Nifs-Like Protein
Length = 384
Score = 24.6 bits (52), Expect = 5.3
Identities = 13/41 (31%), Positives = 22/41 (52%)
Query: 112 IVGIVEAMKIMNEIEVEYPCKVVSVEVGDAQPVEYGTKLIK 152
+V + E K+++E + EVG QPVE T+++K
Sbjct: 126 VVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVK 166
>pdb|1AXC|E Chain E, Human Pcna
pdb|1AXC|C Chain C, Human Pcna
Length = 261
Score = 24.3 bits (51), Expect = 6.9
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 1 MNLSEIEELIKEFKASDLGHLK 22
+++S L+ E+K +D+GHLK
Sbjct: 227 LSMSADVPLVVEYKIADMGHLK 248
>pdb|1A80| Native 2,5-Diketo-D-Gluconic Acid Reductase A From Corynbacterium
Sp. Complexed With Nadph
Length = 277
Score = 24.3 bits (51), Expect = 6.9
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 91 HAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEI 125
H P+P A+ YV A + + + + G+ ++ + N +
Sbjct: 107 HWPTPAADNYVHAWEKMIELRAAGLTRSIGVSNHL 141
>pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-Gluconate Reductase
Length = 278
Score = 24.3 bits (51), Expect = 6.9
Identities = 9/35 (25%), Positives = 20/35 (56%)
Query: 91 HAPSPGAEPYVKAGDTLKKGQIVGIVEAMKIMNEI 125
H P+P A+ YV A + + + + G+ ++ + N +
Sbjct: 108 HWPTPAADNYVHAWEKMIELRAAGLTRSIGVSNHL 142
>pdb|1AXC|A Chain A, Human Pcna
Length = 261
Score = 24.3 bits (51), Expect = 6.9
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 1 MNLSEIEELIKEFKASDLGHLK 22
+++S L+ E+K +D+GHLK
Sbjct: 227 LSMSADVPLVVEYKIADMGHLK 248
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 888,493
Number of Sequences: 13198
Number of extensions: 33266
Number of successful extensions: 84
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 15
length of query: 156
length of database: 2,899,336
effective HSP length: 81
effective length of query: 75
effective length of database: 1,830,298
effective search space: 137272350
effective search space used: 137272350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)