BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645000|ref|NP_207170.1| deoxycytidine triphosphate
deaminase (dcd) [Helicobacter pylori 26695]
(190 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DUN| Eiav Dutpase Native >gi|3319071|pdb|1DUC| Eiav... 35 0.007
pdb|1NOV|C Chain C, Nodamura Virus >gi|2914595|pdb|1NOV|A C... 27 1.9
pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase >gi|1942422|pd... 26 2.5
pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodefi... 26 2.5
pdb|1IDK| Pectin Lyase A 26 2.5
pdb|1RP1| Dog Pancreatic Lipase Related Protein 1 26 3.3
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistan... 25 5.7
>pdb|1DUN| Eiav Dutpase Native
pdb|1DUC| Eiav Dutpase DudpSTRONTIUM COMPLEX
Length = 134
Score = 34.7 bits (78), Expect = 0.007
Identities = 23/106 (21%), Positives = 47/106 (43%), Gaps = 5/106 (4%)
Query: 83 ILPANAFALAHTIEYFKMPKDTLAICLGKSTYARCGIIVNVTPFEPEFEGYITIEISNTT 142
++P + + T ++P ++ GKS+ A+ G+++N + + G I + +N
Sbjct: 28 MIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQVICTNIG 87
Query: 143 NLPAKVYANEGIAQVVFLQGDEMCEQSYKD-----RGGKYQGQVGI 183
K+ + AQ++ LQ Q + + RG K G G+
Sbjct: 88 KSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGV 133
>pdb|1NOV|C Chain C, Nodamura Virus
pdb|1NOV|A Chain A, Nodamura Virus
pdb|1NOV|B Chain B, Nodamura Virus
Length = 355
Score = 26.6 bits (57), Expect = 1.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 126 FEPEFEGYITIEISNTTNLPAKVYAN 151
F P EGY ++ +N TN A ++ N
Sbjct: 247 FHPIMEGYASVPPANVTNAQASMFTN 272
>pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase
pdb|1DUT|B Chain B, Fiv Dutp Pyrophosphatase
Length = 133
Score = 26.2 bits (56), Expect = 2.5
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 100 MPKDTLAICLGKSTYARCGIIVNVTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVF 159
+PK + +GKS+ G+ V + + G I + + N + + + IAQ++
Sbjct: 44 LPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLII 103
Query: 160 LQ-GDEMCEQSY----KDRGGKYQGQVGI 183
L E+ EQ +RG G G+
Sbjct: 104 LPCKHEVLEQGKVVMDSERGDNGYGSTGV 132
>pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7D|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7D|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7K|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7K|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
Length = 136
Score = 26.2 bits (56), Expect = 2.5
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 100 MPKDTLAICLGKSTYARCGIIVNVTPFEPEFEGYITIEISNTTNLPAKVYANEGIAQVVF 159
+PK + +GKS+ G+ V + + G I + + N + + + IAQ++
Sbjct: 44 LPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLII 103
Query: 160 LQ-GDEMCEQSY----KDRGGKYQGQVGI 183
L E+ EQ +RG G G+
Sbjct: 104 LPCKHEVLEQGKVVMDSERGDNGYGSTGV 132
>pdb|1IDK| Pectin Lyase A
Length = 359
Score = 26.2 bits (56), Expect = 2.5
Identities = 25/92 (27%), Positives = 36/92 (38%), Gaps = 21/92 (22%)
Query: 80 GYFILPANAFALAHTI------EYFKMPKDTLA-ICLGKSTYARCGIIVN---------- 122
GY + N F T+ E F +P T +C STY ++N
Sbjct: 267 GYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVC---STYLGRDCVINGFGSSGTFSE 323
Query: 123 -VTPFEPEFEGYITIEISNTTNLPAKVYANEG 153
T F +FEG S T++ ++V AN G
Sbjct: 324 DSTSFLSDFEGKNIASASAYTSVASRVVANAG 355
>pdb|1RP1| Dog Pancreatic Lipase Related Protein 1
Length = 441
Score = 25.8 bits (55), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 46 RVGSEFMLFDNKNALIDPKNFD---PNNATKIDAS 77
R+G+ F+L+ NKN P NF P++ + I AS
Sbjct: 34 RIGTRFLLYTNKN----PNNFQTLLPSDPSTIGAS 64
>pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 25.0 bits (53), Expect = 5.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 19 GMISPFCEKQVGKNVISYGLSSYGYDIRVGSEFML-----FDNKNALIDPK----NFDPN 69
G+ + + N++S SS+G I V ML N +++PK +D N
Sbjct: 363 GLTDEYAGQLPADNIVSIAQSSFGQGISVTQTQMLRAFTAIANDGVMLEPKFISAIYDTN 422
Query: 70 NATKIDASKE 79
N + + KE
Sbjct: 423 NQSVRKSQKE 432
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,181,093
Number of Sequences: 13198
Number of extensions: 49534
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 2,899,336
effective HSP length: 83
effective length of query: 107
effective length of database: 1,803,902
effective search space: 193017514
effective search space used: 193017514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)