BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645002|ref|NP_207172.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(226 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-C... 27 1.5
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-... 26 3.3
pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosph... 26 4.3
pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Com... 25 9.6
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-Coa Oxidase-Ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-Coa Oxidase-Ii From
Rat Liver
Length = 661
Score = 27.3 bits (59), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 1/29 (3%)
Query: 183 IGPEGGFSEPERGYFKEREIYRIPLDMVL 211
IGP+ G+ E + GY K + YRIP + +L
Sbjct: 226 IGPKFGYEEMDNGYLK-MDNYRIPRENML 253
>pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 26.2 bits (56), Expect = 3.3
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 121 AKLERFQKI-----LIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLD 165
A +E F+K +I++C Q G EL V+S++K A++ + + D
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARD 169
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
Length = 282
Score = 25.8 bits (55), Expect = 4.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 24 LYRSRRVKSASRLDLRNLKDGFLYTY 49
L+R+ V S S ++ +KDG LYT+
Sbjct: 169 LHRNNTVTSGSSSNVFGIKDGILYTH 194
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
Length = 555
Score = 24.6 bits (52), Expect = 9.6
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 29/136 (21%)
Query: 111 FSQRNEKIDIAKLERFQKILIHSCEQCGRSALM---------ELEV----FSNTKEALKA 157
FS++ + IA+ F + + QCGR ++ ELE+ ++ E +
Sbjct: 167 FSEQETTVGIARYAPFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSV 226
Query: 158 YPKASVLDFKGETLP------ASADFEKGVIIG-PEGGFSEPERGYFKEREIYRIPLDMV 210
Y +V G+ P ASA +G+ + G SE GY + + +
Sbjct: 227 YGTEAVFT-DGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKS--------M 277
Query: 211 LKSESACVFVASIAQV 226
L ES C+F+ A V
Sbjct: 278 LYLESRCIFITKGAGV 293
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,161,256
Number of Sequences: 13198
Number of extensions: 45477
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 2,899,336
effective HSP length: 85
effective length of query: 141
effective length of database: 1,777,506
effective search space: 250628346
effective search space used: 250628346
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)