BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645003|ref|NP_207173.1| hypothetical protein
[Helicobacter pylori 26695]
         (143 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KQF|C  Chain C, Formate Dehydrogenase N From E. Coli >g...    26  2.0
pdb|1QCR|D  Chain D, Crystal Structure Of Bovine Mitochondri...    24  7.8
pdb|1BGY|D  Chain D, Cytochrome Bc1 Complex From Bovine >gi|...    24  7.8

>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
 pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
          Length = 217

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 16  VMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQ 50
           V+  SLLIHA    +L  A +I++Y  F  K  I+
Sbjct: 147 VVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIK 181



>pdb|1QCR|D Chain D, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
           Complex, Alpha Carbon Atoms Only
          Length = 75

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (81%)

Query: 91  MLLGLLLMLIAEIKRHK 107
           +++GLLL L+  +KRHK
Sbjct: 44  LMMGLLLPLVYAMKRHK 60



>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine
 pdb|1BGY|P Chain P, Cytochrome Bc1 Complex From Bovine
 pdb|1BE3|D Chain D, Cytochrome Bc1 Complex From Bovine
          Length = 241

 Score = 23.9 bits (50), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (81%)

Query: 91  MLLGLLLMLIAEIKRHK 107
           +++GLLL L+  +KRHK
Sbjct: 210 LMMGLLLPLVYAMKRHK 226



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.334    0.143    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,336
Number of Sequences: 13198
Number of extensions: 13771
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 2,899,336
effective HSP length: 79
effective length of query: 64
effective length of database: 1,856,694
effective search space: 118828416
effective search space used: 118828416
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)