BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645004|ref|NP_207174.1| ferrochelatase (hemH)
[Helicobacter pylori 26695]
         (334 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1HRK|A  Chain A, Crystal Structure Of Human Ferrochelata...   147  2e-36
pdb|1AK1|    Ferrochelatase From Bacillus Subtilis >gi|75465...    62  1e-10
pdb|1DOZ|A  Chain A, Crystal Structure Of Ferrochelatase           62  1e-10
pdb|1C9E|A  Chain A, Structure Of Ferrochelatase With Copper...    62  1e-10
pdb|1J97|A  Chain A, Phospho-Aspartyl Intermediate Analogue ...    28  1.1
pdb|1F5S|A  Chain A, Crystal Structure Of Phosphoserine Phos...    28  1.5
pdb|1BAF|L  Chain L, Fab Fragment Of Murine Monoclonal Antib...    27  4.3
pdb|1DKF|B  Chain B, Crystal Structure Of A Heterodimeric Co...    26  5.6
pdb|1PKY|A  Chain A, Pyruvate Kinase From E. Coli In The T-S...    25  9.5
pdb|1GT7|A  Chain A, L-Rhamnulose-1-Phosphate Aldolase From ...    25  9.5
pdb|1FNT|G  Chain G, Crystal Structure Of The 20s Proteasome...    25  9.5
pdb|1E0T|A  Chain A, R292d Mutant Of E. Coli Pyruvate Kinase...    25  9.5
pdb|1E0U|A  Chain A, Structure R271l Mutant Of E. Coli Pyruv...    25  9.5
pdb|1RYP|G  Chain G, Crystal Structure Of The 20s Proteasome...    25  9.5
pdb|1G0U|F  Chain F, A Gated Channel Into The Proteasome Cor...    25  9.5
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
 pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
          Length = 359

 Score =  147 bits (370), Expect = 2e-36
 Identities = 103/330 (31%), Positives = 176/330 (53%), Gaps = 26/330 (7%)

Query: 17  KSPKEAVILLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKK 76
           + PK  +++LNMGGP +L +V  FL  +F D  ++T+    ++  +   I      K ++
Sbjct: 1   RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP---IQNKLAPFIAKRLTPKIQE 57

Query: 77  IYEKLGGKSPLTPITF----ALTERLNKLDPSRF---YTYAMRYTPPYASMVLQDLALKE 129
            Y ++GG SP+   T      + + L++L P+     Y    RY  P     ++++    
Sbjct: 58  QYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDG 117

Query: 130 VESLVFFSMYPQYSSTTTLSSFNDAFNALKSLETFRPKVR--VIERFYASKKLNKIILNT 187
           +E  + F+ YPQYS +TT SS N  +     +   +P ++   I+R+     L +   + 
Sbjct: 118 LERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGR-KPTMKWSTIDRWPTHHLLIQCFADH 176

Query: 188 ILNTLNN---RKSQDFVLIFSVHGLPKSVIDAGDTYQQECEHHVSLLKELMQQKNTPFKE 244
           IL  L++    K  + V++FS H LP SV++ GD Y QE    V  + E ++  N P++ 
Sbjct: 177 ILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYR- 234

Query: 245 VLLSYQSKLGPMKWLEPSTEE----LIEKHRKSHIIIYPLAFTIDNSETLYELDMQY-RL 299
             L +QSK+GPM WL P T+E    L E+ RK +I++ P+AFT D+ ETLYELD++Y ++
Sbjct: 235 --LVWQSKVGPMPWLGPQTDESIKGLCERGRK-NILLVPIAFTSDHIETLYELDIEYSQV 291

Query: 300 MAERLAVKEYLVCPCLNDSIEFAQFIIERV 329
           +A+   V+       LN +  F++ + + V
Sbjct: 292 LAKECGVENIRRAESLNGNPLFSKALADLV 321
>pdb|1AK1|   Ferrochelatase From Bacillus Subtilis
 pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
           Complex With N-Methyl Mesoporphyrin
          Length = 310

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 21/253 (8%)

Query: 71  IEKSKKIYEKLGGKSPLTPIT----FALTERLNKL-DPSRFYTY-AMRYTPPYASMVLQD 124
           ++  K  YE +GG SPL  IT      L + LN++ D   F  Y  +++  P+    + +
Sbjct: 40  LQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAE 99

Query: 125 LALKEVESLVFFSMYPQYSSTTTLSSFNDAFNALKSLETFRPKVRVIERFYASKKLNKII 184
           +    +   V   + P +S+ +  S    A    + L      +  +E +Y   K     
Sbjct: 100 MHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLT--ITSVESWYDEPKFVTYW 157

Query: 185 LNTILNT---LNNRKSQDFVLIFSVHGLPKSVIDAGDTYQQECEHHVSLLKELMQQKNTP 241
           ++ +  T   +   + ++ +LI S H LP+ + + GD Y  +      L+ E        
Sbjct: 158 VDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAE-----GAG 212

Query: 242 FKEVLLSYQSKLG-PMKWLEPS----TEELIEKHRKSHIIIYPLAFTIDNSETLYELDMQ 296
             E  + +QS+   P  WL P     T +L E+      +  P+ F  D+ E LY+ D +
Sbjct: 213 VSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYE 272

Query: 297 YRLMAERLAVKEY 309
            +++ + +    Y
Sbjct: 273 CKVVTDDIGASYY 285
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
          Length = 309

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 21/253 (8%)

Query: 71  IEKSKKIYEKLGGKSPLTPIT----FALTERLNKL-DPSRFYTY-AMRYTPPYASMVLQD 124
           ++  K  YE +GG SPL  IT      L + LN++ D   F  Y  +++  P+    + +
Sbjct: 39  LQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAE 98

Query: 125 LALKEVESLVFFSMYPQYSSTTTLSSFNDAFNALKSLETFRPKVRVIERFYASKKLNKII 184
           +    +   V   + P +S+ +  S    A    + L      +  +E +Y   K     
Sbjct: 99  MHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLT--ITSVESWYDEPKFVTYW 156

Query: 185 LNTILNT---LNNRKSQDFVLIFSVHGLPKSVIDAGDTYQQECEHHVSLLKELMQQKNTP 241
           ++ +  T   +   + ++ +LI S H LP+ + + GD Y  +      L+ E        
Sbjct: 157 VDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAE-----GAG 211

Query: 242 FKEVLLSYQSKLG-PMKWLEPS----TEELIEKHRKSHIIIYPLAFTIDNSETLYELDMQ 296
             E  + +QS+   P  WL P     T +L E+      +  P+ F  D+ E LY+ D +
Sbjct: 212 VSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYE 271

Query: 297 YRLMAERLAVKEY 309
            +++ + +    Y
Sbjct: 272 CKVVTDDIGASYY 284
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
           Methylmesoporphyrin Complex Bound At The Active Site
          Length = 306

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 21/253 (8%)

Query: 71  IEKSKKIYEKLGGKSPLTPIT----FALTERLNKL-DPSRFYTY-AMRYTPPYASMVLQD 124
           ++  K  YE +GG SPL  IT      L + LN++ D   F  Y  +++  P+    + +
Sbjct: 36  LQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAE 95

Query: 125 LALKEVESLVFFSMYPQYSSTTTLSSFNDAFNALKSLETFRPKVRVIERFYASKKLNKII 184
           +    +   V   + P +S+ +  S    A    + L      +  +E +Y   K     
Sbjct: 96  MHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLT--ITSVESWYDEPKFVTYW 153

Query: 185 LNTILNT---LNNRKSQDFVLIFSVHGLPKSVIDAGDTYQQECEHHVSLLKELMQQKNTP 241
           ++ +  T   +   + ++ +LI S H LP+ + + GD Y  +      L+ E        
Sbjct: 154 VDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAE-----GAG 208

Query: 242 FKEVLLSYQSKLG-PMKWLEPS----TEELIEKHRKSHIIIYPLAFTIDNSETLYELDMQ 296
             E  + +QS+   P  WL P     T +L E+      +  P+ F  D+ E LY+ D +
Sbjct: 209 VSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYE 268

Query: 297 YRLMAERLAVKEY 309
            +++ + +    Y
Sbjct: 269 CKVVTDDIGASYY 281
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
 pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
          Length = 211

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 178 KKLNKIILNTILNTLNNRKSQDFV-----LIFSVHGLPKSVIDAGDTYQQECEHHVSLLK 232
           +K  K+IL    +TL N ++ D +     +   V  + K  ++    ++Q     VSLLK
Sbjct: 2   EKKKKLILFXFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLK 61

Query: 233 ELMQQKNTPFKEVLLSYQSKLGPMKWLEPSTEELIEKHRKSHIIIYPLAFTIDNSETLYE 292
           +L      P ++V  + + ++ P +  E + +EL  K+R   + +    F I  ++   +
Sbjct: 62  DL------PIEKVEKAIK-RITPTEGAEETIKEL--KNRGYVVAVVSGGFDIAVNKIKEK 112

Query: 293 LDMQYRLMAERLAVKE 308
           L + Y   A RL VK+
Sbjct: 113 LGLDY-AFANRLIVKD 127
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
 pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
          Length = 211

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 178 KKLNKIILNTILNTLNNRKSQDFV-----LIFSVHGLPKSVIDAGDTYQQECEHHVSLLK 232
           +K  K+IL    +TL N ++ D +     +   V  + K  ++    ++Q     VSLLK
Sbjct: 2   EKKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLK 61

Query: 233 ELMQQKNTPFKEVLLSYQSKLGPMKWLEPSTEELIEKHRKSHIIIYPLAFTIDNSETLYE 292
           +L      P ++V  + + ++ P +  E + +EL  K+R   + +    F I  ++   +
Sbjct: 62  DL------PIEKVEKAIK-RITPTEGAEETIKEL--KNRGYVVAVVSGGFDIAVNKIKEK 112

Query: 293 LDMQYRLMAERLAVKE 308
           L + Y   A RL VK+
Sbjct: 113 LGLDY-AFANRLIVKD 127
>pdb|1BAF|L Chain L, Fab Fragment Of Murine Monoclonal Antibody An02 Complex
           With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy-
           Dinitrophenyl)
          Length = 214

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 91  TFALT-ERLNKLDPSRFYTYAMRYTPPYASMVLQDLALKEVESLVFFSMYPQYSSTTTLS 149
           +++LT  R+   D + +Y       PP    V   L LK  ++    S++P  S   T  
Sbjct: 69  SYSLTISRMEAEDAATYYCQQWSSYPPITFGVGTKLELKRADAAPTVSIFPPSSEQLT-- 126

Query: 150 SFNDAFNALKSLETFRPK-VRVIERFYASKKLNKIILNTILNTLNNRKSQDFVL-IFSVH 207
             +   + +  L  F PK + V  +   S++      N +LN+  ++ S+D    + S  
Sbjct: 127 --SGGASVVCFLNNFYPKDINVKWKIDGSER-----QNGVLNSWTDQDSKDSTYSMSSTL 179

Query: 208 GLPKSVIDAGDTYQQECEHHVS 229
            L K   +  ++Y  E  H  S
Sbjct: 180 TLTKDEYERHNSYTCEATHKTS 201
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
           Rxr Ligand-Binding Domains
          Length = 235

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 12/69 (17%)

Query: 261 PSTEELIEKHRKSHIIIYPL-----AFTIDN-SETLYELDMQYRLMAERLAVKEYLVCPC 314
           P   ELIEK RK+H   +P       +T +N SE    LD+        L+ K      C
Sbjct: 1   PEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTK------C 54

Query: 315 LNDSIEFAQ 323
           +  ++EFA+
Sbjct: 55  IIKTVEFAK 63
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
 pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
 pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
 pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
          Length = 470

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 6  EKLNNLENNATKSPKEAVILLNMGGP 31
          +++ NL N  +K+ K A ILL+  GP
Sbjct: 45 QRIQNLRNVMSKTGKTAAILLDTKGP 70
>pdb|1GT7|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|F Chain F, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|G Chain G, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|H Chain H, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|I Chain I, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|J Chain J, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|K Chain K, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|L Chain L, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|M Chain M, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|N Chain N, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|O Chain O, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|P Chain P, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|Q Chain Q, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|R Chain R, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|S Chain S, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
 pdb|1GT7|T Chain T, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
          Length = 274

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 244 EVLLSYQSKLGPMKWLEPSTEEL----IEKHRKSHIIIYPLAFTIDNSETLYE 292
           E L+ +   +G + W+ P T+E+     ++ +K  ++++P      +  TL E
Sbjct: 171 ECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDE 223
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
          Length = 287

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 285 DNSETLYELDMQYRLMAERLAVKEYLVCPCLNDSIEFAQ 323
           DN E  +EL++ +  ++E   + +++    L ++I+FAQ
Sbjct: 205 DNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ 243
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
          Length = 470

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 6  EKLNNLENNATKSPKEAVILLNMGGP 31
          +++ NL N  +K+ K A ILL+  GP
Sbjct: 45 QRIQNLRNVMSKTGKTAAILLDTKGP 70
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
 pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
          Length = 470

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 6  EKLNNLENNATKSPKEAVILLNMGGP 31
          +++ NL N  +K+ K A ILL+  GP
Sbjct: 45 QRIQNLRNVMSKTGKTAAILLDTKGP 70
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
 pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
          Length = 244

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 285 DNSETLYELDMQYRLMAERLAVKEYLVCPCLNDSIEFAQ 323
           DN E  +EL++ +  ++E   + +++    L ++I+FAQ
Sbjct: 202 DNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ 240
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
          Length = 248

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 285 DNSETLYELDMQYRLMAERLAVKEYLVCPCLNDSIEFAQ 323
           DN E  +EL++ +  ++E   + +++    L ++I+FAQ
Sbjct: 206 DNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ 244
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,770,293
Number of Sequences: 13198
Number of extensions: 68054
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 15
length of query: 334
length of database: 2,899,336
effective HSP length: 89
effective length of query: 245
effective length of database: 1,724,714
effective search space: 422554930
effective search space used: 422554930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)