BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645005|ref|NP_207175.1| thiol:disulfide interchange
protein (dsbC), putative [Helicobacter pylori 26695]
(221 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EGO| Glutaredoxin (Oxidized) (Nmr, 20 Structures) >g... 30 0.29
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 29 0.38
pdb|1EEJ|A Chain A, Crystal Structure Of The Protein Disulf... 29 0.38
pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:a... 29 0.49
pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant 28 0.64
pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma... 28 0.64
pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphyl... 28 0.64
pdb|1NSA| Three-Dimensional Structure Of Porcine Procarbo... 28 0.84
pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonucle... 28 0.84
pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant 27 1.4
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex O... 27 1.4
pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Del... 27 1.9
pdb|1CPB| Carboxypeptidase B (E.C.3.4.12.3) Fraction Ii 27 1.9
pdb|1BGP| Crystal Structure Of Barley Grain Peroxidase 1 27 1.9
pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mut... 27 1.9
pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mut... 27 1.9
pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6) >gi|493890|pdb|1BL... 27 1.9
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Pho... 27 2.4
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 26 3.2
pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase... 26 4.2
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 26 4.2
pdb|1B6E| Human Cd94 26 4.2
pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon ... 25 5.4
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose... 25 7.1
pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Act... 25 7.1
pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With As... 25 7.1
pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin 25 9.3
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Confor... 25 9.3
pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 25 9.3
pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Act... 25 9.3
pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near ... 25 9.3
pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 25 9.3
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 25 9.3
pdb|1H78|A Chain A, Structural Basis For Allosteric Substra... 25 9.3
pdb|1SCM|B Chain B, Myosin (Regulatory Domain) 25 9.3
>pdb|1EGO| Glutaredoxin (Oxidized) (Nmr, 20 Structures)
pdb|1EGR| Glutaredoxin (Reduced) (Nmr, 20 Structures)
Length = 85
Score = 29.6 bits (65), Expect = 0.29
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 82 LVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNI 120
++FGR+GC YC R K + + RD F YV+I
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNERD----DFQYQYVDI 38
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 29.3 bits (64), Expect = 0.38
Identities = 34/157 (21%), Positives = 66/157 (41%), Gaps = 20/157 (12%)
Query: 22 LSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLEDVFSDNKSISPND---K 78
LSA NNK+ ++NL KE D+ D +DK+S + ++ K I ++ K
Sbjct: 152 LSAKDPNNKEFYEKNL--------KEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFK 203
Query: 79 YMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFKVGDKNNEKE 138
Y +G E ++ ++++ +++ + +K V +++
Sbjct: 204 YFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEK--------LRQTKVPSLFVESSVDDRP 255
Query: 139 IK-MSTEELAQIYAVQSTPTIVLSDKTGKTIYELPGY 174
+K +S + IYA T +I K G + Y + Y
Sbjct: 256 MKTVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKY 292
>pdb|1EEJ|A Chain A, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
pdb|1EEJ|B Chain B, Crystal Structure Of The Protein Disulfide Bond Isomerase,
Dsbc, From Escherichia Coli
Length = 216
Score = 29.3 bits (64), Expect = 0.38
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 25/131 (19%)
Query: 74 SPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEHDFK---- 129
+P +K+++ VF C YC + + + + L ++ + + + E + K
Sbjct: 83 APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVR-YLAFPRQGLDSDAEKEMKAIWC 141
Query: 130 VGDKNNEKEIKMSTE---------ELAQIYA------VQSTPTIVLSDKTGKTIYELPGY 174
DKN + M+ + ++A YA V TP +VLS+ T +PGY
Sbjct: 142 AKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGT-----LVPGY 196
Query: 175 MPSTQFLAVLE 185
P + L+
Sbjct: 197 QPPKEMKEFLD 207
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 28.9 bits (63), Expect = 0.49
Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + Y
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVR--YQIEL 137
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
D +S S D FG+ K +N K L D + + S + I
Sbjct: 138 DYYSPK---SKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 193
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 194 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 235
>pdb|1KGE| Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 28.5 bits (62), Expect = 0.64
Identities = 42/162 (25%), Positives = 64/162 (38%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 136
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
++ KS D FG+ K +N K L D + + S + I
Sbjct: 137 LMYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 193
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 194 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 235
>pdb|1FYH|A Chain A, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
pdb|1FYH|D Chain D, 1:1 Complex Between An Interferon Gamma Single-Chain
Variant And Its Receptor
Length = 258
Score = 28.5 bits (62), Expect = 0.64
Identities = 38/151 (25%), Positives = 68/151 (44%), Gaps = 24/151 (15%)
Query: 31 DKLDENLLSSGSQSSKELNDERDNIDKKSYAGLEDVFSDNKSIS-------PNDKYMLLV 83
D+L + + G+ S E E +N+ K AG DV +DN ++ + ++
Sbjct: 112 DELIQVMAELGANVSGEFVKEAENLKKYFNAGHSDV-ADNGTLFLGILKNWKEESDRKIM 170
Query: 84 FGRNGCSYCERFK--KDLKNVKELRDYIKEHFSAYYVNISYSKEHDFK------VGDKNN 135
+ Y + FK KD +++++ + IKE + + N + K DF+ V D N
Sbjct: 171 QSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNV 230
Query: 136 EKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
+++ + EL Q+ A S + KTGK
Sbjct: 231 QRK---AIHELIQVMAELSP-----AAKTGK 253
>pdb|1ALQ| Circularly Permuted Beta-Lactamase From Staphylococcus Aureus Pc1
Length = 266
Score = 28.5 bits (62), Expect = 0.64
Identities = 39/159 (24%), Positives = 64/159 (39%), Gaps = 32/159 (20%)
Query: 69 DNKSISPNDKYMLLVFGRNGCSYCERFKKDLKN-VKELRDYIKE---HFSAYYVNISYSK 124
DNKS PNDK + S + F KN KEL D K+ H Y ++ K
Sbjct: 16 DNKSDKPNDK----LISETAKSVMKEFAAGSKNAAKELNDLEKKYNAHIGVYALDTKSGK 71
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAV--QSTPTIVLSDKTGKTIYELPGYMPSTQFLA 182
E F N++K ++ A A+ + P L+ K ++ Y P +
Sbjct: 72 EVKF-----NSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILE--- 123
Query: 183 VLEFIGDGKYQDTKDDEDLTKK--LKAYIKYKTNLSKSK 219
+++G +D+T K ++A + Y N + +K
Sbjct: 124 --KYVG----------KDITLKALIEASMTYSDNTANNK 150
>pdb|1NSA| Three-Dimensional Structure Of Porcine Procarboxypeptidase B: A
Structural Basis Of Its Inactivity
Length = 395
Score = 28.1 bits (61), Expect = 0.84
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 90 SYCERFKKDLKNVKELRDYIKEHFS---AYYVNISYSK------EHDFKVGDKNNEKE-- 138
+YC + K K L D+I+ + S AY SYS+ +D+K+ + + E
Sbjct: 250 TYCGSAAESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKLPENDAELNSL 309
Query: 139 IKMSTEELAQIY 150
K + +ELA +Y
Sbjct: 310 AKGAVKELASLY 321
>pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 28.1 bits (61), Expect = 0.84
Identities = 29/119 (24%), Positives = 48/119 (39%), Gaps = 14/119 (11%)
Query: 3 SLSYVSKKFLSVLLL----ISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKK 58
+ S V+K + L + I +++ AC +N K K +++ KE N I +
Sbjct: 88 AFSKVAKNLIEKLNIRDDEIEIYIDACSTNTK-KFEDSFKDKIEDIIKERNLNIKIIAEH 146
Query: 59 SYAGLEDVFSDNKSISPNDK-----YMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEH 112
V S I+ ++ Y ++G G Y D K +K L DY K+H
Sbjct: 147 KADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIGSGY----PSDPKTIKFLEDYFKKH 201
>pdb|1KGF| Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 27.3 bits (59), Expect = 1.4
Identities = 42/162 (25%), Positives = 63/162 (37%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 136
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS D FG+ K +N K L D + + S + I
Sbjct: 137 LQYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 193
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 194 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 235
>pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
Length = 258
Score = 27.3 bits (59), Expect = 1.4
Identities = 42/162 (25%), Positives = 63/162 (37%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYD---IE 136
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS D FG+ K +N K L D + + S + I
Sbjct: 137 LQYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 193
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 194 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 235
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163 - 178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 242
Score = 26.9 bits (58), Expect = 1.9
Identities = 43/162 (26%), Positives = 62/162 (37%), Gaps = 23/162 (14%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N D + A
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPDTSTPAAFG 139
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
NK I+ NG K +N K L D + + S + I
Sbjct: 140 KTL--NKLIA------------NG-------KLSKENKKFLLDLMLNNKSGDTL-IKDGV 177
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 178 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 219
>pdb|1CPB| Carboxypeptidase B (E.C.3.4.12.3) Fraction Ii
Length = 306
Score = 26.9 bits (58), Expect = 1.9
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 13/77 (16%)
Query: 87 NGCS--YCERFKKDLKNVKELRDYIKEHFS---AYYVNISYSK------EHDFKVGDKNN 135
N CS YC + K K + D+I+ H S AY SYS+ +D+K+ N
Sbjct: 156 NPCSETYCGSAAESEKESKAVADFIRNHLSSIKAYLTIHSYSQMMLYPYSYDYKLPKNNV 215
Query: 136 EKE--IKMSTEELAQIY 150
E K + ++LA ++
Sbjct: 216 ELNTLAKGAVKKLASLH 232
>pdb|1BGP| Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 26.9 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 56 DKKSYAGLEDVFSDNKSISPNDKYMLLVFGRNG 88
D +S+A +DV SD S N + +L + GR G
Sbjct: 134 DSRSFASTQDVLSDLPGPSSNVQSLLALLGRLG 166
>pdb|1DJC| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 120k
pdb|1DJB| Structure Of Beta-Lactamase Precursor, S70a Mutant, At 298k
Length = 257
Score = 26.9 bits (58), Expect = 1.9
Identities = 42/162 (25%), Positives = 63/162 (37%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 79 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 135
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS D FG+ K +N K L D + + S + I
Sbjct: 136 LNYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 192
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 193 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 234
>pdb|1DJA| Structure Of Beta-Lactamase Precursor, K73h Mutant, At 298k
Length = 258
Score = 26.9 bits (58), Expect = 1.9
Identities = 42/162 (25%), Positives = 63/162 (37%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 80 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 136
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS D FG+ K +N K L D + + S + I
Sbjct: 137 LNYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 193
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 194 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 235
>pdb|3BLM| Beta-Lactamase (E.C.3.5.2.6)
pdb|1BLC| Beta-Lactamase (E.C.3.5.2.6) Complex With Degradation Products Of
Clavulanate
pdb|1BLH| Beta-Lactamase (E.C.3.5.2.6) Complexed With
[[n-(Benzyloxycarbonyl)amino]methyl]phosphonate
Length = 257
Score = 26.9 bits (58), Expect = 1.9
Identities = 42/162 (25%), Positives = 63/162 (37%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 79 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 135
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS D FG+ K +N K L D + + S + I
Sbjct: 136 LNYYSPKS--KKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 192
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 193 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 234
>pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
Length = 104
Score = 26.6 bits (57), Expect = 2.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 58 KSYAGLEDVFSDNKSISPNDKYMLL-------VFGRNGCSYCERFKKDLKNVKELRDYIK 110
KS+ + DN I +D+++ L V G N C + + D K V+ +RD +K
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN-CRFLQGRGTDRKAVQLIRDAVK 59
Query: 111 EHFSAYYVNISYSK 124
E ++Y+K
Sbjct: 60 EQRDVTVQVLNYTK 73
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/42 (30%), Positives = 25/42 (58%), Gaps = 5/42 (11%)
Query: 99 LKNVKELRDYIKEHFSAYYVNISYSKEHDFKVGDKNNEKEIK 140
LK KE+ ++ YY+ S ++ ++F++ D+NNE + K
Sbjct: 130 LKGKKEI-----DNGKKYYLLESNNQVYEFRISDENNEVQYK 166
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed Disulfide
Bond
pdb|1GRX| Structure Of E. Coli Glutaredoxin
Length = 85
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Query: 82 LVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNI 120
++FGR+GC Y R K + + RD F YV+I
Sbjct: 4 VIFGRSGCPYSVRAKDLAEKLSNERD----DFQYQYVDI 38
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 25.8 bits (55), Expect = 4.2
Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 14/106 (13%)
Query: 52 RDNIDK--KSYAGLEDVFSDNKSISPNDKYMLLVFGR---NGCSYCERFKKDLKNVKELR 106
RD + K + Y DV + K+ S +D LL + + + F + +N E++
Sbjct: 157 RDILSKINQPYQKFLDVLNTIKNASDSDGQDLLFTNQLKEHPTDFSVEFLE--QNSNEVQ 214
Query: 107 DYIKEHFSAYYVN------ISYSKEHDFKVGDKNNEKEIKMSTEEL 146
+ + F AYY+ + F DK NE+EI +S EEL
Sbjct: 215 EVFAKAF-AYYIEPQHRDVLQLYAPEAFNYMDKFNEQEINLSLEEL 259
>pdb|1B6E| Human Cd94
Length = 128
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 86 RNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKEH 126
R+ C+ + L+N EL D++ Y++ +SYS+EH
Sbjct: 35 RHLCASQKSSLLQLQNTDEL-DFMSSSQQFYWIGLSYSEEH 74
>pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon Pyrococcus Furiosus
Length = 226
Score = 25.4 bits (54), Expect = 5.4
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 64 EDVFSDNKSISPNDKYMLLVFGRNG-CSYCERFKKDLKNVKELRD 107
E+ FS K ++P L+VF R C YC++ K+ ++ + EL D
Sbjct: 14 EEFFS--KMVNP---VKLIVFVRKDHCQYCDQLKQLVQELSELTD 53
>pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
Length = 361
Score = 25.0 bits (53), Expect = 7.1
Identities = 33/151 (21%), Positives = 63/151 (40%), Gaps = 17/151 (11%)
Query: 46 KELNDERDNIDKKSYAG-LEDVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDL----- 99
K D NIDK +YAG LE + ++S N ++ + E+++ D
Sbjct: 22 KNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLA 81
Query: 100 ------KNVKELRDYIKEHFSAYYVNISYSKEHDFKVGD--KNNEKEIKMSTEELAQIYA 151
+++ +I+ + Y + ++++ +G+ KNN + +ST+E +Y
Sbjct: 82 AESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE---VYG 138
Query: 152 VQSTPTIVLSDKTGKTIYELPGYMPSTQFLA 182
P V + T E Y PS+ + A
Sbjct: 139 DLPHPDEVENSVTLPLFTETTAYAPSSPYSA 169
>pdb|1EKU|B Chain B, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
pdb|1EKU|A Chain A, Crystal Structure Of A Biologically Active Single Chain
Mutant Of Human Ifn-Gamma
Length = 265
Score = 25.0 bits (53), Expect = 7.1
Identities = 21/73 (28%), Positives = 38/73 (51%), Gaps = 11/73 (15%)
Query: 91 YCERFK--KDLKNVKELRDYIKEHFSAYYVNISYSKEHDFK------VGDKNNEKEIKMS 142
Y + FK KD +++++ + IKE + + N + K DF+ V D N +++ +
Sbjct: 54 YFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRK---A 110
Query: 143 TEELAQIYAVQST 155
+EL Q+ A ST
Sbjct: 111 IDELIQVMAEFST 123
>pdb|1BLP| Beta-Lactamase (E.C.3.5.2.6) P54 Mutant With Asp 179 Replaced By
Asn (D179n)
Length = 257
Score = 25.0 bits (53), Expect = 7.1
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 7/162 (4%)
Query: 6 YVSKKF-LSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLE 64
YV K L L+ S+ S +NNK + + Q KEL D+ N + +E
Sbjct: 79 YVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYE---IE 135
Query: 65 DVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSK 124
+ KS + FG+ K +N K L D + + S + I
Sbjct: 136 LNYYSPKS--KKNTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTL-IKDGV 192
Query: 125 EHDFKVGDKNNEKEIKMSTEELAQIYAVQSTPTIVLSDKTGK 166
D+KV DK+ + S ++A +Y + IVL T K
Sbjct: 193 PKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNK 234
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/90 (21%), Positives = 36/90 (39%), Gaps = 9/90 (10%)
Query: 89 CSYCERFKKDLKNVKELRDYIKEHFSAYYVNISYSKE------HDFKVGDKNNEKEIKMS 142
C C++ K+L++ I + S Y + ++S+E D K G+ E K+
Sbjct: 182 CPTCQKMNKNLRSTAVYNYAIFDEPSGYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLI 241
Query: 143 TEELAQIYAVQSTPTIVLSDKTGKTIYELP 172
E + A ++ G +Y+ P
Sbjct: 242 LEGIQSAPAASQAASL---QNRGGLMYKFP 268
>pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
Length = 156
Score = 24.6 bits (52), Expect = 9.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 14/105 (13%)
Query: 54 NIDKKSYAGLEDV--FSDNKSISPNDKYMLLVFGR-----NGCSYCERFKKDLKNVKELR 106
++D+ + ED+ S+ +P+DK + + N + F L +
Sbjct: 28 DVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGT-DSE 86
Query: 107 DYIKEHFSAY------YVNISYSKEHDFKVGDKNNEKEIKMSTEE 145
+ I+ F+ + +NI Y K+ +GD N+ E++M+ +E
Sbjct: 87 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 131
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 24.6 bits (52), Expect = 9.3
Identities = 25/93 (26%), Positives = 38/93 (39%), Gaps = 16/93 (17%)
Query: 57 KKSYAGLEDVFSDNK---SISPNDK-YMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEH 112
K Y +ED S+ K + DK Y L+FG + E +K +K Y +
Sbjct: 324 KDKYKFVED--SEGKYSIDVESFDKLYKSLMFGFTETNIAENYK-----IKTRASYFSDS 376
Query: 113 FSAYYV-----NISYSKEHDFKVGDKNNEKEIK 140
+ N Y+ E F + DK+ EKE +
Sbjct: 377 LPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYR 409
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 24.6 bits (52), Expect = 9.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 14/105 (13%)
Query: 54 NIDKKSYAGLEDV--FSDNKSISPNDKYMLLVFGR-----NGCSYCERFKKDLKNVKELR 106
++D+ + ED+ S+ +P+DK + + N + F L +
Sbjct: 16 DVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGT-DSE 74
Query: 107 DYIKEHFSAY------YVNISYSKEHDFKVGDKNNEKEIKMSTEE 145
+ I+ F+ + +NI Y K+ +GD N+ E++M+ +E
Sbjct: 75 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 119
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 24.6 bits (52), Expect = 9.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 14/105 (13%)
Query: 54 NIDKKSYAGLEDV--FSDNKSISPNDKYMLLVFGR-----NGCSYCERFKKDLKNVKELR 106
++D+ + ED+ S+ +P+DK + + N + F L +
Sbjct: 17 DVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGT-DSE 75
Query: 107 DYIKEHFSAY------YVNISYSKEHDFKVGDKNNEKEIKMSTEE 145
+ I+ F+ + +NI Y K+ +GD N+ E++M+ +E
Sbjct: 76 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 120
>pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain With
Synaptobrevin-Ii Bound
Length = 425
Score = 24.6 bits (52), Expect = 9.3
Identities = 25/93 (26%), Positives = 38/93 (39%), Gaps = 16/93 (17%)
Query: 57 KKSYAGLEDVFSDNK---SISPNDK-YMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEH 112
K Y +ED S+ K + DK Y L+FG + E +K +K Y +
Sbjct: 324 KDKYKFVED--SEGKYSIDVESFDKLYKSLMFGFTETNIAENYK-----IKTRASYFSDS 376
Query: 113 FSAYYV-----NISYSKEHDFKVGDKNNEKEIK 140
+ N Y+ E F + DK+ EKE +
Sbjct: 377 LPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYR 409
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 24.6 bits (52), Expect = 9.3
Identities = 25/93 (26%), Positives = 38/93 (39%), Gaps = 16/93 (17%)
Query: 57 KKSYAGLEDVFSDNK---SISPNDK-YMLLVFGRNGCSYCERFKKDLKNVKELRDYIKEH 112
K Y +ED S+ K + DK Y L+FG + E +K +K Y +
Sbjct: 324 KDKYKFVED--SEGKYSIDVESFDKLYKSLMFGFTETNIAENYK-----IKTRASYFSDS 376
Query: 113 FSAYYV-----NISYSKEHDFKVGDKNNEKEIK 140
+ N Y+ E F + DK+ EKE +
Sbjct: 377 LPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYR 409
>pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dctp.
pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Datp
pdb|1H77|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dgtp
pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases: Nrdd
In Complex With Dttp
pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
Regulation In Class Iii Ribonucleotide Reductases,
Native Nrdd
Length = 605
Score = 24.6 bits (52), Expect = 9.3
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Query: 60 YAGLEDVFSDNKSISPNDKYMLLVFGRNGCSYCER--FKKDLKNVKELRDYIKEHFSAYY 117
+ +E+ + + IS Y + G + SY E K +LK ++ + DY +H +
Sbjct: 477 HVSVEENITPFEKISREAPYHFIATGGH-ISYVELPDMKNNLKGLEAVWDYAAQHLDYFG 535
Query: 118 VNISYSK 124
VN+ K
Sbjct: 536 VNMPVDK 542
>pdb|1SCM|B Chain B, Myosin (Regulatory Domain)
Length = 145
Score = 24.6 bits (52), Expect = 9.3
Identities = 22/105 (20%), Positives = 46/105 (42%), Gaps = 14/105 (13%)
Query: 54 NIDKKSYAGLEDV--FSDNKSISPNDKYMLLVFGR-----NGCSYCERFKKDLKNVKELR 106
++D+ + ED+ S+ +P+DK + + N + F L +
Sbjct: 17 DVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGT-DSE 75
Query: 107 DYIKEHFSAY------YVNISYSKEHDFKVGDKNNEKEIKMSTEE 145
+ I+ F+ + +NI Y K+ +GD N+ E++M+ +E
Sbjct: 76 ETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKE 120
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.312 0.131 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,267,755
Number of Sequences: 13198
Number of extensions: 53971
Number of successful extensions: 171
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 47
length of query: 221
length of database: 2,899,336
effective HSP length: 85
effective length of query: 136
effective length of database: 1,777,506
effective search space: 241740816
effective search space used: 241740816
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)