BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645007|ref|NP_207177.1| fucosyltransferase
[Helicobacter pylori 26695]
(425 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++ >gi|1942... 28 2.0
pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Compl... 28 2.0
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted ... 28 2.0
pdb|1FVP|A Chain A, Flavoprotein 390 >gi|1311361|pdb|1FVP|B... 28 2.0
pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed... 27 4.4
pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor W... 27 4.4
pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Ant... 27 4.4
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase F... 27 5.7
pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX 26 7.5
pdb|1BDG| Hexokinase From Schistosoma Mansoni Complexed W... 26 7.5
pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 9.7
pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 9.7
pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tab... 26 9.7
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZON| Cd11a I-Domain Without Bound Cation
Length = 187
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 318 DGKAYFYQDLSFKKILDFFKTILE--NDTIYH----KFSTSFMWEYD 358
DG D F+KILDF K +++ ++T Y +FSTS+ E+D
Sbjct: 13 DGSMSLQPD-EFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFD 58
>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
Length = 182
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 318 DGKAYFYQDLSFKKILDFFKTILE--NDTIYH----KFSTSFMWEYD 358
DG D F+KILDF K +++ ++T Y +FSTS+ E+D
Sbjct: 10 DGSMSLQPD-EFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFD 55
>pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 318 DGKAYFYQDLSFKKILDFFKTILE--NDTIYH----KFSTSFMWEYD 358
DG D F+KILDF K +++ ++T Y +FSTS+ E+D
Sbjct: 14 DGSMSLQPD-EFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFD 59
>pdb|1FVP|A Chain A, Flavoprotein 390
pdb|1FVP|B Chain B, Flavoprotein 390
Length = 231
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/72 (23%), Positives = 31/72 (42%)
Query: 172 VNDESDLLKRGFASFVASNANAPMRNAFYDALNSIEPVTGGGSVRNTLGYKVGNKSEFLS 231
VN+ + K ++ + + F +++SI GS ++ L Y +F +
Sbjct: 134 VNEAETVAKEELKLYIENYVACTQPSNFNGSIDSIIQSNVTGSYKDCLSYVANLAGKFDN 193
Query: 232 QYKFNLCFENSQ 243
F LCFE+ Q
Sbjct: 194 TVDFLLCFESMQ 205
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 26.9 bits (58), Expect = 4.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 137 VNDTTAPYKLKDNSLYALK-KPSHHFKENHPNLC 169
V D+ Y + NS Y L+ K S F EN PNLC
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLC 104
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (Il1ra)
Length = 319
Score = 26.9 bits (58), Expect = 4.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 137 VNDTTAPYKLKDNSLYALK-KPSHHFKENHPNLC 169
V D+ Y + NS Y L+ K S F EN PNLC
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLC 104
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 26.9 bits (58), Expect = 4.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 137 VNDTTAPYKLKDNSLYALK-KPSHHFKENHPNLC 169
V D+ Y + NS Y L+ K S F EN PNLC
Sbjct: 68 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLC 101
>pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
Length = 483
Score = 26.6 bits (57), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 213 GSVRNTLGYKVGNKSEFLSQYKFNLCFENSQGYGYVTEKILD 254
G + N L N+S F FNL +SQG GY K+L+
Sbjct: 268 GKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLN 309
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
Length = 418
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 282 VHDFNNFDEAIDYI--KYLHTHPNAYLDMLYENPLNTLDGKAY 322
V D++ + ++ + KYL P + +L E PLNT + + Y
Sbjct: 83 VEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREY 125
>pdb|1BDG| Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 26.2 bits (56), Expect = 7.5
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 288 FDEAIDYIKYLHTHPNAYLDMLYENPLNTL---------DGKAYFYQDLSFK-----KIL 333
FD+++D I LH Y M+ L L + K F DL + +L
Sbjct: 266 FDKSMD-IDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLL 324
Query: 334 DFFKTILENDTIYHKFSTSFMWEYDLHKPLVSIDDLRV 371
+ T +E D + ++T +M DLH P+V D R+
Sbjct: 325 TRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRI 362
>pdb|5EAU| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.8 bits (55), Expect = 9.7
Identities = 21/91 (23%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Query: 247 YVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLHTHPNAYL 306
Y +++++ YF + S A+ K+ + ++ +A +K L AY
Sbjct: 262 YARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE----AYT 317
Query: 307 DMLYENPLNTLDGKAYFYQDLSFKKILDFFK 337
D + +N +D + Y +S+K ILD +K
Sbjct: 318 DAIQRWDINEID-RLPDYMKISYKAILDLYK 347
>pdb|5EAT| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate
Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 25.8 bits (55), Expect = 9.7
Identities = 21/91 (23%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Query: 247 YVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLHTHPNAYL 306
Y +++++ YF + S A+ K+ + ++ +A +K L AY
Sbjct: 262 YARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE----AYT 317
Query: 307 DMLYENPLNTLDGKAYFYQDLSFKKILDFFK 337
D + +N +D + Y +S+K ILD +K
Sbjct: 318 DAIQRWDINEID-RLPDYMKISYKAILDLYK 347
>pdb|5EAS| 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 25.8 bits (55), Expect = 9.7
Identities = 21/91 (23%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Query: 247 YVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFNNFDEAIDYIKYLHTHPNAYL 306
Y +++++ YF + S A+ K+ + ++ +A +K L AY
Sbjct: 262 YARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE----AYT 317
Query: 307 DMLYENPLNTLDGKAYFYQDLSFKKILDFFK 337
D + +N +D + Y +S+K ILD +K
Sbjct: 318 DAIQRWDINEID-RLPDYMKISYKAILDLYK 347
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,642,063
Number of Sequences: 13198
Number of extensions: 120620
Number of successful extensions: 333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 13
length of query: 425
length of database: 2,899,336
effective HSP length: 91
effective length of query: 334
effective length of database: 1,698,318
effective search space: 567238212
effective search space used: 567238212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)