BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645010|ref|NP_207180.1| zinc-metallo protease
(YJR117W) [Helicobacter pylori 26695]
(407 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1AVC| Bovine Annexin Vi (Calcium-Bound) 28 2.5
pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal S... 27 4.2
pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen P... 27 4.2
pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii He... 27 4.2
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 27 5.5
pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphori... 26 9.3
>pdb|1AVC| Bovine Annexin Vi (Calcium-Bound)
Length = 673
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 184 MILANLFYPKIAQLFNQFTPLNNRDLESQIEGMM 217
MIL YP + ++F +F + N D+E I+ M
Sbjct: 549 MILCTRSYPDLRRVFQEFVKMTNYDVEHTIKKEM 582
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 26.9 bits (58), Expect = 4.2
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 185 ILANLFYPKIAQLFNQFTPLNNRDLESQIE 214
+LA YP++ Q+F++++ ++N+ + IE
Sbjct: 194 VLATRSYPQLHQIFHEYSKISNKTILQAIE 223
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 26.9 bits (58), Expect = 4.2
Identities = 25/72 (34%), Positives = 35/72 (47%), Gaps = 13/72 (18%)
Query: 213 IEGMMDKVGFKSEGIFVMDASKRDGRLNAYFGGLGKNKRVVLFDTLISKVGTEGLLAI-- 270
I+G +D++GFK E V+D G N GGLG+ L + + TEG+ A
Sbjct: 138 IKGALDELGFKLED--VLDQEPDAGLGN---GGLGR-----LAACFVDSMATEGIPAWGY 187
Query: 271 -LGHELGHFKNK 281
L +E G F K
Sbjct: 188 GLRYEYGIFAQK 199
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 26.9 bits (58), Expect = 4.2
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 185 ILANLFYPKIAQLFNQFTPLNNRDLESQIE 214
+LA YP++ Q+F++++ ++N+ + IE
Sbjct: 194 VLATRSYPQLHQIFHEYSKISNKTILQAIE 223
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 26.6 bits (57), Expect = 5.5
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 65 ISQILDGIIFAGWVFFGLTHLEDLTHYLNLPETLGYLVFALLFLAIQSVLALPISYYTTM 124
+S++ + +I FG L D L L + VF L + + LP +Y +
Sbjct: 237 LSKMAEDLIIYSTSEFGFLTLSDAPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDL 296
Query: 125 HLDKEFGFSKVSLSLFFKDFFKGLSLTLSV 154
DKE F V G+ TL +
Sbjct: 297 QEDKEAVFDVVDTLTAVLQVATGVISTLQI 326
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 25.8 bits (55), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 243 FGGLGKNKRVVLFDTLISKVGT 264
+G +GK RVVL D +++ GT
Sbjct: 132 YGSIGKGSRVVLIDDVLATGGT 153
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.147 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,218,078
Number of Sequences: 13198
Number of extensions: 86876
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 7
length of query: 407
length of database: 2,899,336
effective HSP length: 90
effective length of query: 317
effective length of database: 1,711,516
effective search space: 542550572
effective search space used: 542550572
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)