BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645011|ref|NP_207181.1| hypothetical protein
[Helicobacter pylori 26695]
         (174 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FA0|B  Chain B, Structure Of Yeast Poly(A) Polymerase B...    30  0.12
pdb|1KB9|C  Chain C, Yeast Cytochrome Bc1 Complex >gi|142777...    26  2.9

>pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
 pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
          Length = 537

 Score = 30.4 bits (67), Expect = 0.12
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 91  SNIGAFVASFK-NDALIKTPYFALKKQGFYLTDSAPTNRLGVSKIIIAEEEIQKNFI 146
           S +GA  A  K ND+LI+     LKK+G + T+    NR+ V KI+   +E+ + F+
Sbjct: 14  STVGATAAENKLNDSLIQE----LKKEGSFETEQETANRVQVLKIL---QELAQRFV 63



>pdb|1KB9|C Chain C, Yeast Cytochrome Bc1 Complex
 pdb|1EZV|C Chain C, Structure Of The Yeast Cytochrome Bc1 Complex Co-
           Crystallized With An Antibody Fv-Fragment
 pdb|1KYO|C Chain C, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
 pdb|1KYO|N Chain N, Yeast Cytochrome Bc1 Complex With Bound Substrate
           Cytochrome C
          Length = 385

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (59%)

Query: 9   FLIIYTLSTLLLVGVLLALFFFYAKNNL 36
           + I   L T+ L  ++LALF FY+ N L
Sbjct: 224 YFIFKDLVTVFLFMLILALFVFYSPNTL 251



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.141    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 860,668
Number of Sequences: 13198
Number of extensions: 32005
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 2
length of query: 174
length of database: 2,899,336
effective HSP length: 82
effective length of query: 92
effective length of database: 1,817,100
effective search space: 167173200
effective search space used: 167173200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)