BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644671|ref|NP_206840.1| hypothetical protein
[Helicobacter pylori 26695]
(245 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) ... 30 0.33
pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Ce... 27 2.8
pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Anti... 27 2.8
pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin ... 27 2.8
pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A... 27 2.8
pdb|1KB9|G Chain G, Yeast Cytochrome Bc1 Complex >gi|142777... 26 3.7
pdb|1KYO|G Chain G, Yeast Cytochrome Bc1 Complex With Bound... 26 3.7
pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases... 25 6.3
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Fo... 25 6.3
pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free ... 25 6.3
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 29.6 bits (65), Expect = 0.33
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 151 DLIKTQNSIYVQSHLEREVHIVNIA----IYQQDNNPIASVSIAAKLLNENKLVYEKRYK 206
D ++ + IY+Q+H++REV IV + + D N ++ + KL+ + K +++ K
Sbjct: 14 DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 207 IV 208
+
Sbjct: 74 TI 75
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 195 NENKLVYEKRYKIVLSY 211
NEN +YEK YKI+ +Y
Sbjct: 404 NENDKIYEKAYKIIETY 420
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 195 NENKLVYEKRYKIVLSY 211
NEN +YEK YKI+ +Y
Sbjct: 404 NENDKIYEKAYKIIETY 420
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 195 NENKLVYEKRYKIVLSY 211
NEN +YEK YKI+ +Y
Sbjct: 406 NENDKIYEKAYKIIETY 422
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 195 NENKLVYEKRYKIVLSY 211
NEN +YEK YKI+ +Y
Sbjct: 406 NENDKIYEKAYKIIETY 422
>pdb|1KB9|G Chain G, Yeast Cytochrome Bc1 Complex
pdb|1EZV|F Chain F, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
Length = 125
Score = 26.2 bits (56), Expect = 3.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 115 IGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLER 167
IG Y+L ++++ + + L K+ +F+DLI +N I +Q+ L R
Sbjct: 9 IGDYILKSPVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPI-MQTALRR 60
>pdb|1KYO|G Chain G, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|R Chain R, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 126
Score = 26.2 bits (56), Expect = 3.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 115 IGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIYVQSHLER 167
IG Y+L ++++ + + L K+ +F+DLI +N I +Q+ L R
Sbjct: 10 IGDYILKSPVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPI-MQTALRR 61
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-
Trna Synthetase Complexed With Tryptophanyl-5'amp
Length = 328
Score = 25.4 bits (54), Expect = 6.3
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 25 LENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF 84
+ N L+ +S L QS+ LER Y+ G F A + +V+ ++ P+Q+ HH+
Sbjct: 238 ISNLLNIYST--LSGQSIEELERQ-----YEGKGYGVFKADLAQVVIETLRPIQERYHHW 290
Query: 85 VDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNR 122
++ D+ + + A+K+ + R + A L R
Sbjct: 291 MESEELDR--VLDEGAEKANRVASEMVRKMEQAMGLGR 326
>pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
Length = 699
Score = 25.4 bits (54), Expect = 6.3
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 121 NRESINRIDDKSRYELVRLQSSSKVWQRFEDLIK 154
N S N ID + R L R + W F D ++
Sbjct: 299 NCPSWNTIDPEERERLTRRHEDGEFWMSFSDFLR 332
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 25.4 bits (54), Expect = 6.3
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 25 LENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF 84
+ N L+ +S L QS+ LER Y+ G F A + +V+ ++ P+Q+ HH+
Sbjct: 238 ISNLLNIYST--LSGQSIEELERQ-----YEGKGYGVFKADLAQVVIETLRPIQERYHHW 290
Query: 85 VDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNR 122
++ D+ + + A+K+ + R + A L R
Sbjct: 291 MESEELDR--VLDEGAEKANRVASEMVRKMEQAMGLGR 326
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,238,881
Number of Sequences: 13198
Number of extensions: 44900
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 10
length of query: 245
length of database: 2,899,336
effective HSP length: 86
effective length of query: 159
effective length of database: 1,764,308
effective search space: 280524972
effective search space used: 280524972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)