BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645012|ref|NP_207182.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase B... 29 0.45
pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.1... 28 1.3
pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Doma... 27 2.9
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 25 6.5
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal ... 25 6.5
>pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
Length = 537
Score = 29.3 bits (64), Expect = 0.45
Identities = 34/162 (20%), Positives = 68/162 (40%), Gaps = 12/162 (7%)
Query: 79 EQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYDFYIESKKVK 138
++ +W + + LVM + A I+ + + +E+ D Y+ I+ K
Sbjct: 372 DEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTEDDYEM-IQDKY-- 428
Query: 139 RKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNLKDASIPKGYYLQ---IGAXLNAP 195
+HK ETA+N + +T E+ + E+ K+ K L I + ++ ++ P
Sbjct: 429 ----GSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEKVDIHIP 484
Query: 196 SKDFLQTLKTF--PYQIKKKDSLTHYFIGPYKTKEEALKQLE 235
+F+ ++F Y K +L F+ Y +E + E
Sbjct: 485 CTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENE 526
>pdb|1ISC|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISC|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1ISA|A Chain A, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISA|B Chain B, Iron(Ii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|A Chain A, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
pdb|1ISB|B Chain B, Iron(Iii) Superoxide Dismutase (E.C.1.15.1.1)
Length = 192
Score = 27.7 bits (60), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 45 IQLRLNQVHEELIEMLENMGKGTQYEFPKIKEILEQSE 82
I+ + H+ + L N+ KGT +E ++EI+ SE
Sbjct: 23 IEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSE 60
>pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Domain) Mutant With Leu
Glu (His)6 Added To The C Terminus (Ins(G105-Lehhhhhh))
(Nmr, 25 Structures)
Length = 113
Score = 26.6 bits (57), Expect = 2.9
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 176 KDASIPKGYYLQIGAXLNAPSKDFLQTLKTFPYQIKKKDSLTHYFIGPYKTKEEA-LKQL 234
K + PKG G+ L +P +DF + + F ++I H+F + + +A ++ +
Sbjct: 39 KSDNSPKGMIPLKGSTLTSPCQDFGK--RMFVFKITTTKQQDHFFQAAFLEERDAWVRDI 96
Query: 235 ENAIK 239
AIK
Sbjct: 97 NKAIK 101
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 25.4 bits (54), Expect = 6.5
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 117 EAYVKQRIHDLYDFYIE-SKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNL 175
EA VK IH L+D Y+ +K ++ + +++ +++ K + + +
Sbjct: 210 EALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRF 269
Query: 176 KDASIPKGYYLQIGAXLN 193
++ SI K Y+ A LN
Sbjct: 270 REFSIEK--YIDTYARLN 285
>pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 25.4 bits (54), Expect = 6.5
Identities = 21/106 (19%), Positives = 50/106 (46%), Gaps = 5/106 (4%)
Query: 70 EFPKIKEILEQSEEEWLKVAHEECVALVMLISPKASIENSPIYKNCYEAYVKQRIHDLYD 129
E P+ + +L++ ++ W+++ H+ + ++ K ++ K A K I DL
Sbjct: 270 EVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKK--LKQFADEKRMGTAADKAGIKDLSQ 327
Query: 130 FYIESKKVKRKIKKAHKQETAINQSQPLTKESPKNENKKNLVKPNL 175
KK+ + K+ K T ++ ++ K+ ++ +K V+ +L
Sbjct: 328 ML---KKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDL 370
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,377,895
Number of Sequences: 13198
Number of extensions: 54677
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 5
length of query: 250
length of database: 2,899,336
effective HSP length: 86
effective length of query: 164
effective length of database: 1,764,308
effective search space: 289346512
effective search space used: 289346512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)