BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645013|ref|NP_207183.1| hypothetical protein
[Helicobacter pylori 26695]
(76 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 0.18
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 25 1.2
pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Co... 25 1.6
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 23 4.5
pdb|1KIL|E Chain E, Three-Dimensional Structure Of The Comp... 23 4.5
pdb|1RSY| Synaptotagmin I (First C2 Domain) (Calb) 23 4.5
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 23 5.9
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 23 5.9
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 23 5.9
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 23 5.9
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.1 bits (61), Expect = 0.18
Identities = 21/74 (28%), Positives = 40/74 (53%), Gaps = 7/74 (9%)
Query: 7 LLNQLGAKIDELIEKIKKQE---EELNALRQ----ANTTLNAQNEEKDIQIAILYDELSA 59
L N+ + I EL ++KK+E +EL +++ ++ L+ Q E QIA L +L+
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 60 KDKGIQGLYDKISD 73
K++ +Q ++ D
Sbjct: 1093 KEEELQAALARLED 1106
Score = 25.0 bits (53), Expect = 1.6
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 7 LLNQLGAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQG 66
+L+++ A+I+E E+ ++ + E ++Q L Q EE++ L E D I+
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 67 LYDKI 71
+ D I
Sbjct: 988 MEDDI 992
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 25.4 bits (54), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 26 EEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDK 62
EE R+ TL E +DI + DELS +DK
Sbjct: 361 EEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDK 397
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 25.0 bits (53), Expect = 1.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 14 KIDELIEKIKK-QEEELNALRQ-ANTTLNAQNEEK---DIQIAILYDELSAK 60
++ ELIEK++K +E AL Q T N +E++ DI + + ELS K
Sbjct: 2 EVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTK 53
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 23.5 bits (49), Expect = 4.5
Identities = 16/51 (31%), Positives = 22/51 (42%)
Query: 26 EEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLYDKISDLLS 76
EE ++ TL E +DI + DELS +D+ KI LS
Sbjct: 382 EEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLS 432
>pdb|1KIL|E Chain E, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 49
Score = 23.5 bits (49), Expect = 4.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 23 KKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKGIQGLY 68
KK+EE ALRQA EE+ + A + E +GI+ Y
Sbjct: 9 KKEEERQEALRQA-------EEERKAKYAKMEAEREVMRQGIRDKY 47
>pdb|1RSY| Synaptotagmin I (First C2 Domain) (Calb)
Length = 152
Score = 23.5 bits (49), Expect = 4.5
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 12 GAKIDELIEKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDKG 63
G +D ++EK + +EEE Q + + QN + + I I EL A D G
Sbjct: 10 GGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGI-IQAAELPALDMG 60
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 23.1 bits (48), Expect = 5.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 14 KIDELIEKIKKQEEELNALRQANTTLNAQNEEKD----IQIAILYDELSAKDK 62
K D++I + ++E+EL Q +++ EEK+ +QI I D LS ++K
Sbjct: 303 KKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDI-RDSLSEEEK 354
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 23.1 bits (48), Expect = 5.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 8 LNQLGAKIDELI-----EKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDK 62
L ++ A DE I E + EEEL A + T D++I ++ + K+K
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTI--------DLKITPVFLGSALKNK 267
Query: 63 GIQGLYDKISDLL 75
G+Q L D + D L
Sbjct: 268 GVQLLLDAVVDYL 280
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 23.1 bits (48), Expect = 5.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 8 LNQLGAKIDELI-----EKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDK 62
L ++ A DE I E + EEEL A + T D++I ++ + K+K
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTI--------DLKITPVFLGSALKNK 267
Query: 63 GIQGLYDKISDLL 75
G+Q L D + D L
Sbjct: 268 GVQLLLDAVVDYL 280
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 23.1 bits (48), Expect = 5.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 8 LNQLGAKIDELI-----EKIKKQEEELNALRQANTTLNAQNEEKDIQIAILYDELSAKDK 62
L ++ A DE I E + EEEL A + T D++I ++ + K+K
Sbjct: 216 LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTI--------DLKITPVFLGSALKNK 267
Query: 63 GIQGLYDKISDLL 75
G+Q L D + D L
Sbjct: 268 GVQLLLDAVVDYL 280
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.308 0.130 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,994
Number of Sequences: 13198
Number of extensions: 10317
Number of successful extensions: 48
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 11
length of query: 76
length of database: 2,899,336
effective HSP length: 52
effective length of query: 24
effective length of database: 2,213,040
effective search space: 53112960
effective search space used: 53112960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)