BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645014|ref|NP_207184.1| hypothetical protein
[Helicobacter pylori 26695]
(78 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon ... 29 0.082
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of B... 26 0.69
pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNAR... 23 4.5
pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 23 4.5
pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxsk... 23 4.5
pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Char... 23 5.8
pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 23 5.8
pdb|1C50|A Chain A, Identification And Structural Character... 23 5.8
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glyc... 23 5.8
pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphoryl... 23 5.8
pdb|1NOJ| Complex Of Glycogen Phosphorylase With A Transi... 23 5.8
pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State... 23 5.8
pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Co... 23 5.8
pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Dom... 23 7.6
pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx... 23 7.6
pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Dough... 23 7.6
>pdb|1A8L| Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 29.3 bits (64), Expect = 0.082
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 26 SDEMKRTLKERFHNQELNALELL----KDYLHESCQNEYLHNELQKLLEKIS 73
SD K+ +KE F ++ +N ++L+ KD+ Q + L EL +L +K+S
Sbjct: 5 SDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLS 56
>pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'-Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 26.2 bits (56), Expect = 0.69
Identities = 15/40 (37%), Positives = 20/40 (49%)
Query: 4 ENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELN 43
E+ S EI Y GK++K + MKR K R+ E N
Sbjct: 293 ESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENN 332
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 23.5 bits (49), Expect = 4.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 34 KERFHNQELNALELLKDYLHESCQNEYLHNELQKLLEKISSCSIT 78
K R N++ A E+L +Y + N Y E ++ L K C IT
Sbjct: 4 KRRNFNKQ--ATEILNEYFYSHLSNPYPSEEAKEELAK--KCGIT 44
>pdb|1LDJ|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 23.5 bits (49), Expect = 4.5
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 1 MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALE---LLKDYLHESCQ 57
+++ +S E +L + + + + E E LE ++ YLHES Q
Sbjct: 209 LTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQ 268
Query: 58 NEYLHNELQKLLEK 71
+E Q L+EK
Sbjct: 269 DELARKCEQVLIEK 282
Score = 23.1 bits (48), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 13 LGKRYK-ISLNNTFSDEMKRTLKERFHNQELNALE 46
LG+ Y +S E+K+ L+ HNQ L A+E
Sbjct: 303 LGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIE 337
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 23.5 bits (49), Expect = 4.5
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 1 MSLENDSLEITYLGKRYKISLNNTFSDEMKRTLKERFHNQELNALE---LLKDYLHESCQ 57
+++ +S E +L + + + + E E LE ++ YLHES Q
Sbjct: 211 LTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQ 270
Query: 58 NEYLHNELQKLLEK 71
+E Q L+EK
Sbjct: 271 DELARKCEQVLIEK 284
Score = 23.1 bits (48), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 13 LGKRYK-ISLNNTFSDEMKRTLKERFHNQELNALE 46
LG+ Y +S E+K+ L+ HNQ L A+E
Sbjct: 305 LGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIE 339
>pdb|1AXR| Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1GPY| Glycogen Phosphorylase B (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-6-Phosphate
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|1PYG|A Chain A, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|C Chain C, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|D Chain D, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
pdb|1PYG|B Chain B, Glycogen Phosphorylase B (Pyridoxal-5'-Pyrophosphoryl
Derivative) (E.C.2.4.1.1) Complex With Adenosine
Monophosphate
Length = 842
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 540 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 587
>pdb|5GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Methylene-Phosphate And Maltohexaose
pdb|3GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose-1-Phosphate
pdb|4GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
2-Fluoro-2-Deoxy-Alpha-D-Glucose-1-Phosphate
pdb|2GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Alpha-D-Glucose
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-Monophosphate
pdb|6GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With
Heptulose 2-Phosphate And Maltoheptaose And AMP
pdb|1GPA|A Chain A, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|C Chain C, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|D Chain D, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|1GPA|B Chain B, Glycogen Phosphorylase a (E.C.2.4.1.1) (R State)
pdb|7GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|7GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State) Complex
With AMP
pdb|9GPB|A Chain A, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|B Chain B, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|D Chain D, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|9GPB|C Chain C, Glycogen Phosphorylase b (E.C.2.4.1.1) (R State)
pdb|1GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State)
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
Length = 842
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 540 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 587
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 528 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 575
>pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
Length = 842
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 540 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 587
>pdb|1A8I| Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN| 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
Length = 842
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 540 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 587
>pdb|1NOJ| Complex Of Glycogen Phosphorylase With A Transition State Analogue
Nojirimycin Tetrazole And Phosphate In The T State
pdb|1NOK| Complex Of Glycogen Phosphorylase With A Transition State Analogue
Nojirimycin Tetrazole And Phosphate In The T State
pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
Length = 842
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 540 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 587
>pdb|8GPB| Glycogen Phosphorylase b (E.C.2.4.1.1) (T State) Complex With AMP
Length = 832
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 530 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 577
>pdb|1ABB|A Chain A, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|B Chain B, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|C Chain C, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
pdb|1ABB|D Chain D, Glycogen Phosphorylase (E.C.2.4.1.1) Complex With
Pyridoxal-5'-Diphosphate
Length = 828
Score = 23.1 bits (48), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 ENDSLEITYLGKRYKISLN-NTFSDEMKRTLKERFHNQELNALELLKDY 51
EN YL + YK+ +N N+ D + + E + Q LN L ++ Y
Sbjct: 531 ENKLKFAAYLEREYKVHINPNSLFDVQVKRIHE-YKRQLLNCLHVITLY 578
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 22.7 bits (47), Expect = 7.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 15 KRYKISLNNTFSDEMKRTL 33
K Y+ SL +TFSD+ R +
Sbjct: 66 KEYRDSLKHTFSDQHSRDI 84
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 22.7 bits (47), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 44 ALELLKDYLHESCQNEYLHNELQKLLEKISSCSIT 78
A E+L +Y + N Y E ++ L K C IT
Sbjct: 14 ATEILNEYFYSHLSNPYPSEEAKEELAK--KCGIT 46
>pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|C Chain C, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|B Chain B, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
Length = 209
Score = 22.7 bits (47), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 21 LNNTFSDEMKRTLKERFHNQELNALELLKDYL 52
++NTF+DE+ H + + LE LK ++
Sbjct: 175 VDNTFADELVELSTALEHQEYITFLEDLKSFV 206
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,587
Number of Sequences: 13198
Number of extensions: 12642
Number of successful extensions: 35
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 18
length of query: 78
length of database: 2,899,336
effective HSP length: 54
effective length of query: 24
effective length of database: 2,186,644
effective search space: 52479456
effective search space used: 52479456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)